BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0851600 Os01g0851600|AK101345
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38050.1 | chr2:15921303-15922176 REVERSE LENGTH=263 172 2e-43
AT5G16010.1 | chr5:5227982-5229012 FORWARD LENGTH=269 72 3e-13
AT1G72590.1 | chr1:27335601-27336989 FORWARD LENGTH=321 65 5e-11
AT2G16530.1 | chr2:7163276-7165064 REVERSE LENGTH=344 57 1e-08
AT3G55360.1 | chr3:20521186-20522856 REVERSE LENGTH=311 53 1e-07
>AT2G38050.1 | chr2:15921303-15922176 REVERSE LENGTH=263
Length = 262
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 136/266 (51%), Gaps = 11/266 (4%)
Query: 6 GDDALYARCLVILYLISPITVFLLRFVSAPYGKLSRPGWGPAVPAALAWFLMESPTMCXX 65
D + CL+ L P T LL+F+ APYGK +R GWGP V +AWF+MESPT+
Sbjct: 5 ADKTFFRYCLLTLIFAGPPTAVLLKFLQAPYGKHNRTGWGPTVSPPIAWFVMESPTLWLT 64
Query: 66 XXXXXXXXXXXXXXXXXXXXXXXXXXHYVNRTLVHXXXXXXXXXXXXXX--XILVXXXXX 123
HY +RT+++ I +
Sbjct: 65 LLLFPFGRHALNPKSLLLFSPYLI--HYFHRTIIYPLRLFRSSFPAGKNGFPITIAALAF 122
Query: 124 XXXXXXXYVQARSWXXXXXXXXXXXXXXXXXXXXXRCLVGLALFAWGMRTNIAADKALLR 183
Y+QAR R ++G+ +F GM NI +D+ L+R
Sbjct: 123 TFNLLNGYIQAR------WVSHYKDDYEDGNWFWWRFVIGMVVFITGMYINITSDRTLVR 176
Query: 184 LKEAGKG-YQIPRGGLFDVVTCPNYFGEAVEWLGYALVAWTPAAWAFFLYTCSNLGPRAR 242
LK+ +G Y IPRGG F++V+CPNYFGEA+EWLG+A++ W+ A FFLYTCSNL PRAR
Sbjct: 177 LKKENRGGYVIPRGGWFELVSCPNYFGEAIEWLGWAVMTWSWAGIGFFLYTCSNLFPRAR 236
Query: 243 DHRRWYVGKFGDKYPASRKAFVPYIY 268
+WY+ KF ++YP +RKA +P++Y
Sbjct: 237 ASHKWYIAKFKEEYPKTRKAVIPFVY 262
>AT5G16010.1 | chr5:5227982-5229012 FORWARD LENGTH=269
Length = 268
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 161 LVGLALFAWGMRTNIAADKAL--LRLKEAGKGYQIPRGGLFDVVTCPNYFGEAVEWLGYA 218
L G+ +F G+ N+ L LR ++ K Y+IP+GGLFD++ CP+Y E + + +
Sbjct: 160 LAGVVMFVVGIVGNLYHHVLLAKLRKEDGKKEYKIPKGGLFDIIICPHYLFEILVFWSFF 219
Query: 219 LVAWTPAAWAFFLYTCSNLGPRARDHRRWYVGKFGDKYPASRKAFVPYIY 268
L++ T +++F + T L R+ R WY+ KF D +P KA +P+++
Sbjct: 220 LISQTIYSFSFAMGTMLYLIGRSYATRTWYLSKF-DDFPKHIKALIPFVF 268
>AT1G72590.1 | chr1:27335601-27336989 FORWARD LENGTH=321
Length = 320
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 162 VGLALFAWGMRTNIAADKALLRLKE---AGKGYQIPRGGLFDVVTCPNYFGEAVEWLGYA 218
+G A+F WG L L+E K Y IP G F++V+CP++ E V +LG
Sbjct: 210 IGGAIFLWGWIHQRRCHAILGSLREYPSQAKEYIIPYGDWFEMVSCPHFLAEIVLYLGLL 269
Query: 219 LVA--WTPAAWAFFLYTCSNLGPRARDHRRWYVGKFGDKYPASRKAFVPYIY 268
+ + + W F + +NL A + RWY+ KF + YPASR A P++Y
Sbjct: 270 ISSGGTDISIWLLFGFVAANLTYAAGETHRWYLQKF-ENYPASRHAIFPHVY 320
>AT2G16530.1 | chr2:7163276-7165064 REVERSE LENGTH=344
Length = 343
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 162 VGLALFAWGMRTNIAADKALLRLKE---AGKGYQIPRGGLFDVVTCPNYFGEAVEWLGYA 218
+G A+F WG L L+E K Y IP G F +V+ P++ E V + G
Sbjct: 233 IGGAIFLWGWIHQRRCHAILGSLRENPSQAKEYIIPYGDWFGMVSSPHFLAEIVLYAGLL 292
Query: 219 LVA--WTPAAWAFFLYTCSNLGPRARDHRRWYVGKFGDKYPASRKAFVPYIY 268
+ + W F + +NL A + RWY+ KF + YPA+R A PY+Y
Sbjct: 293 IASGGTDITIWLLFGFVAANLTYAAGETHRWYLRKF-ENYPANRHAIFPYVY 343
>AT3G55360.1 | chr3:20521186-20522856 REVERSE LENGTH=311
Length = 310
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 182 LRLKEAGKGYQIPRGGLFDVVTCPNYFGEAVEWLGYALVAWTPAAWAF-----FLYTCSN 236
LR GYQIPRG LF++VTC NY E +WLG+ + T A + F + T
Sbjct: 220 LRDPSGAGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTIAGYVFLAVAALIMTNWA 279
Query: 237 LGPRARDHRRWYVGKFGD-KYP 257
LG +R R+ + GK G KYP
Sbjct: 280 LGKHSR-LRKIFDGKDGKPKYP 300
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.143 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,359,502
Number of extensions: 155329
Number of successful extensions: 372
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 6
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)