BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0850900 Os01g0850900|AK102887
(216 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37970.1 | chr2:15891027-15891704 FORWARD LENGTH=226 279 7e-76
AT3G10130.1 | chr3:3131122-3133158 REVERSE LENGTH=310 97 6e-21
AT5G20140.2 | chr5:6799066-6800892 REVERSE LENGTH=396 74 8e-14
>AT2G37970.1 | chr2:15891027-15891704 FORWARD LENGTH=226
Length = 225
Score = 279 bits (714), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 140/217 (64%), Positives = 167/217 (76%), Gaps = 3/217 (1%)
Query: 1 MGMVLGKITVETPKHEVLHTGAGYEVRKYPPCVVAEVTYDPAEMKGDRDGGFTVLGNYIG 60
MGMV GKI VETPK+ V +G GYE+R+YPP V AEVTYD +E KGD+DGGF +L YIG
Sbjct: 11 MGMVFGKIAVETPKYTVTKSGDGYEIREYPPAVAAEVTYDASEFKGDKDGGFQLLAKYIG 70
Query: 61 ALGNPQNTKPEKIDMTAPVITSGEPESIAMTAPVITSGEPEPVAMTAPVITAEERSQGKG 120
G P+N KPEKI MTAPVIT E E IAMTAPVIT E E + MT+PV+T E +G+
Sbjct: 71 VFGKPENEKPEKIAMTAPVITK-EGEKIAMTAPVITK-ESEKIEMTSPVVTKEGGGEGRK 128
Query: 121 QM-TMQFLLPSKYSKVEEAPRPTDERVVLRQVGERKYGVVRFSGLTGDKVVKEKAEWLKA 179
++ TMQFLLPS Y K EEAPRPTDERVV+++ G RKYGV++FSG+ + VV EK + L +
Sbjct: 129 KLVTMQFLLPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSEKVKKLSS 188
Query: 180 ALEKDGFTVKGPFVLARYNPPFTLPPLRTNEVMVPVE 216
LEKDGF + G FVLARYNPP+TLPP RTNEVM+PVE
Sbjct: 189 HLEKDGFKITGDFVLARYNPPWTLPPFRTNEVMIPVE 225
>AT3G10130.1 | chr3:3131122-3133158 REVERSE LENGTH=310
Length = 309
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 109/213 (51%), Gaps = 27/213 (12%)
Query: 10 VETPKHEVLHTGAGYEVRKYPPCVVAEVTYDPAEMKGDRDGG---FTVLGNYIGALGNPQ 66
+ET VL YE+R+ P VAE T P E D G F VL Y+ +
Sbjct: 114 LETMNFRVLFRTDKYEIRQVEPYFVAE-TIMPGETGFDSYGASKSFNVLAEYLFG----K 168
Query: 67 NTKPEKIDMTAPVITSGEPESIAMTAPVITSGEPEPVAMTAPVITAEERSQGKGQMTMQF 126
NT EK++MT PV+T V + GE + MT PVIT++ + Q Q M F
Sbjct: 169 NTIKEKMEMTTPVVTRK----------VQSVGEK--MEMTTPVITSKAKDQN--QWRMSF 214
Query: 127 LLPSKYSKVEEAPRPTDERVVLRQVGERKYGVVRFSGLTGDKVVKEKAEWLKAALEKDG- 185
++PSKY P P D V ++QV + VV FSG D+ ++ + L+ AL+ D
Sbjct: 215 VMPSKYG--SNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKK 272
Query: 186 FTVKG--PFVLARYNPPFTLPPLRTNEVMVPVE 216
F V+ F +A+YNPPFTLP +R NEV + VE
Sbjct: 273 FRVRDGVSFEVAQYNPPFTLPFMRRNEVSLEVE 305
>AT5G20140.2 | chr5:6799066-6800892 REVERSE LENGTH=396
Length = 395
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 39/191 (20%)
Query: 10 VETPKHEVLHTGAGYEVRKYPPCVVAEVTYDPAEMKGDRDGGFTVLGNYIGALGNPQNTK 69
+ETPK+++L A YEVR Y P +V E GD+ G + N G + +T
Sbjct: 205 LETPKYQILKRTANYEVRNYEPFIVVETI-------GDKLSGSSGFNNVAGYIFGKNSTM 257
Query: 70 PEKIDMTAPVITSGEPESIAMTAPVITSGEPEPVAMTAPVITAEERSQGKGQMTMQFLLP 129
E + MT PV T +Q +++Q ++P
Sbjct: 258 -------------------------------EKIPMTTPVFTQTTDTQLSSDVSVQIVIP 286
Query: 130 SKYSKVEEAPRPTDERVVLRQVGERKYGVVRFSGLTGDKVVKEKAEWLKAALEKDGFTVK 189
S + P P +E+V L+++ V+FSG + VV+ K L+++L KDG K
Sbjct: 287 SG-KDLSSLPMPNEEKVNLKKLEGGFAAAVKFSGKPTEDVVQAKENELRSSLSKDGLRAK 345
Query: 190 GPFVLARYNPP 200
+LARYN P
Sbjct: 346 KGCMLARYNDP 356
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,213,917
Number of extensions: 234494
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 4
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)