BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0847800 Os01g0847800|AK100718
(81 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37770.2 | chr2:15834888-15836659 FORWARD LENGTH=316 99 3e-22
AT2G37790.1 | chr2:15838838-15840752 FORWARD LENGTH=315 97 2e-21
AT3G53880.1 | chr3:19953238-19955171 FORWARD LENGTH=316 94 2e-20
AT2G37760.2 | chr2:15831995-15833742 FORWARD LENGTH=312 88 7e-19
AT2G21260.1 | chr2:9105693-9107308 REVERSE LENGTH=310 77 2e-15
AT2G21250.1 | chr2:9103408-9105116 REVERSE LENGTH=310 76 3e-15
AT5G01670.2 | chr5:252000-253856 FORWARD LENGTH=350 59 5e-10
AT5G62420.1 | chr5:25064835-25066111 FORWARD LENGTH=317 54 1e-08
AT1G59950.1 | chr1:22068033-22070588 REVERSE LENGTH=321 48 1e-06
AT1G59960.1 | chr1:22071410-22073067 REVERSE LENGTH=327 47 2e-06
>AT2G37770.2 | chr2:15834888-15836659 FORWARD LENGTH=316
Length = 315
Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 54/79 (68%)
Query: 3 THFTLNTGARIPSVGLGTYKXXXXXXXXXXXXXXXXXYRHIDCAPLYKNEQEIGGALKKL 62
T F LNTGA+ PSVGLGT++ YRHIDCA +Y NE+EIG LKKL
Sbjct: 6 TFFKLNTGAKFPSVGLGTWQASPGLVGDAVAAAVKIGYRHIDCAQIYGNEKEIGAVLKKL 65
Query: 63 FDDGVVKREDLFITSKIWC 81
F+D VVKREDLFITSK+WC
Sbjct: 66 FEDRVVKREDLFITSKLWC 84
>AT2G37790.1 | chr2:15838838-15840752 FORWARD LENGTH=315
Length = 314
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 54/77 (70%)
Query: 5 FTLNTGARIPSVGLGTYKXXXXXXXXXXXXXXXXXYRHIDCAPLYKNEQEIGGALKKLFD 64
F LNTGA+IPSVGLGT++ YRHIDCA +Y NE+EIG LKKLFD
Sbjct: 8 FELNTGAKIPSVGLGTWQADPGLVGNAVDAAVKIGYRHIDCAQIYGNEKEIGLVLKKLFD 67
Query: 65 DGVVKREDLFITSKIWC 81
GVVKRE++FITSK+WC
Sbjct: 68 GGVVKREEMFITSKLWC 84
>AT3G53880.1 | chr3:19953238-19955171 FORWARD LENGTH=316
Length = 315
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 51/76 (67%)
Query: 5 FTLNTGARIPSVGLGTYKXXXXXXXXXXXXXXXXXYRHIDCAPLYKNEQEIGGALKKLFD 64
F LNTGA+IPSVGLGT++ Y+HIDCA Y NE EIG LKKLFD
Sbjct: 8 FQLNTGAKIPSVGLGTWQAAPGVVGDAVAAAVKIGYQHIDCASRYGNEIEIGKVLKKLFD 67
Query: 65 DGVVKREDLFITSKIW 80
DGVVKRE LFITSKIW
Sbjct: 68 DGVVKREKLFITSKIW 83
>AT2G37760.2 | chr2:15831995-15833742 FORWARD LENGTH=312
Length = 311
Score = 88.2 bits (217), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 5 FTLNTGARIPSVGLGTYKXXXXXXXXXXXXXXXXXYRHIDCAPLYKNEQEIGGALKKLFD 64
F LNTGA++P VGLGTY YRHIDCA +Y NE+EIGG LKKL
Sbjct: 8 FELNTGAKLPCVGLGTY----AMVATAIEQAIKIGYRHIDCASIYGNEKEIGGVLKKLIG 63
Query: 65 DGVVKREDLFITSKIWC 81
DG VKRE+LFITSK+W
Sbjct: 64 DGFVKREELFITSKLWS 80
>AT2G21260.1 | chr2:9105693-9107308 REVERSE LENGTH=310
Length = 309
Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%)
Query: 5 FTLNTGARIPSVGLGTYKXXXXXXXXXXXXXXXXXYRHIDCAPLYKNEQEIGGALKKLFD 64
TLN+G ++P +GLG ++ YRH+DCA YKNE E+G AL + F
Sbjct: 3 ITLNSGFKMPIIGLGVWRMEKEELRDLIIDAIKIGYRHLDCAANYKNEAEVGEALTEAFT 62
Query: 65 DGVVKREDLFITSKIW 80
G+VKREDLFIT+K+W
Sbjct: 63 TGLVKREDLFITTKLW 78
>AT2G21250.1 | chr2:9103408-9105116 REVERSE LENGTH=310
Length = 309
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%)
Query: 4 HFTLNTGARIPSVGLGTYKXXXXXXXXXXXXXXXXXYRHIDCAPLYKNEQEIGGALKKLF 63
TLN+G ++P VGLG ++ YRH+DCA Y+NE E+G AL + F
Sbjct: 2 EITLNSGFKMPIVGLGVWRMEKEGIRDLILNAIKIGYRHLDCAADYRNETEVGDALTEAF 61
Query: 64 DDGVVKREDLFITSKIW 80
G+VKREDLFIT+K+W
Sbjct: 62 KTGLVKREDLFITTKLW 78
>AT5G01670.2 | chr5:252000-253856 FORWARD LENGTH=350
Length = 349
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 5 FTLNTGARIPSVGLGTYKXXXXXXXXXXXXXXXXXYRHIDCAPLYKNEQEIGGALKKLFD 64
F L +G +IP+VGLGT++ YRHID A Y +++E+G +K+
Sbjct: 16 FRLLSGHKIPAVGLGTWRSGSQAAHAVVTAIVEGGYRHIDTAWEYGDQREVGQGIKRAMH 75
Query: 65 DGVVKREDLFITSKIW 80
G ++R DLF+TSK+W
Sbjct: 76 AG-LERRDLFVTSKLW 90
>AT5G62420.1 | chr5:25064835-25066111 FORWARD LENGTH=317
Length = 316
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 7 LNTGARIPSVGLGTY--KXXXXXXXXXXXXXXXXXYRHIDCAPLYKNEQEIGGALKKLFD 64
L G IP +G+GTY + YRH D A +Y +E+ +G AL +
Sbjct: 8 LRCGETIPLLGMGTYCPQKDRESTISAVHQAIKIGYRHFDTAKIYGSEEALGTALGQAIS 67
Query: 65 DGVVKREDLFITSKIW 80
G V+R+DLF+TSK+W
Sbjct: 68 YGTVQRDDLFVTSKLW 83
>AT1G59950.1 | chr1:22068033-22070588 REVERSE LENGTH=321
Length = 320
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 40 YRHIDCAPLYKNEQEIGGALKKLFDDGVVK-REDLFITSKIWC 81
YRH D +P Y+ E+ +G AL + G+++ R +LF+TSK+WC
Sbjct: 45 YRHFDTSPRYQTEEPLGEALAEAVSLGLIQSRSELFVTSKLWC 87
>AT1G59960.1 | chr1:22071410-22073067 REVERSE LENGTH=327
Length = 326
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 40 YRHIDCAPLYKNEQEIGGALKKLFDDGVVK-REDLFITSKIWC 81
YRH D +P Y+ E+ IG AL + G+V+ R + F+T+K+WC
Sbjct: 51 YRHFDTSPRYQTEEPIGEALAEAVSLGLVRSRSEFFVTTKLWC 93
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,382,755
Number of extensions: 35120
Number of successful extensions: 74
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 10
Length of query: 81
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 29
Effective length of database: 9,680,937
Effective search space: 280747173
Effective search space used: 280747173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)