BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0844200 Os01g0844200|AK109255
(76 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55515.1 | chr3:20590923-20591162 FORWARD LENGTH=80 59 6e-10
AT2G39705.1 | chr2:16557038-16557301 FORWARD LENGTH=88 58 8e-10
AT3G14362.1 | chr3:4794181-4794327 REVERSE LENGTH=49 51 1e-07
AT1G53708.1 | chr1:20052530-20053032 FORWARD LENGTH=110 51 1e-07
AT2G29125.1 | chr2:12523472-12523819 FORWARD LENGTH=116 50 3e-07
AT2G36985.1 | chr2:15534943-15535104 REVERSE LENGTH=54 50 3e-07
AT5G59510.1 | chr5:23990089-23990523 FORWARD LENGTH=145 49 5e-07
AT3G46613.1 | chr3:17165791-17166225 FORWARD LENGTH=145 49 6e-07
AT1G07490.1 | chr1:2301526-2301849 REVERSE LENGTH=108 49 6e-07
AT4G13395.1 | chr4:7785883-7786050 REVERSE LENGTH=56 48 8e-07
AT4G35783.1 | chr4:16952612-16952800 FORWARD LENGTH=63 47 2e-06
>AT3G55515.1 | chr3:20590923-20591162 FORWARD LENGTH=80
Length = 79
Score = 58.5 bits (140), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 9/54 (16%)
Query: 32 GGDGGA-GKSRPS--------FTCRCVRLVKEQRARFYIMRRCVTMLVCWHEYQ 76
G +GGA +R S FT +C RLVKEQRARFYIMRRCV ML+CW ++
Sbjct: 19 GDNGGALNTTRSSRQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLICWTDHN 72
>AT2G39705.1 | chr2:16557038-16557301 FORWARD LENGTH=88
Length = 87
Score = 58.2 bits (139), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 35 GGAGKSRPSFTCRCVRLVKEQRARFYIMRRCVTMLVCWHE 74
G + R +FT +C RLVKEQRARFYIMRRCV ML+CW +
Sbjct: 43 NGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRD 82
>AT3G14362.1 | chr3:4794181-4794327 REVERSE LENGTH=49
Length = 48
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 43 SFTCRCVRLVKEQRARFYIMRRCVTMLVCWH 73
+FT +CV LVKEQRAR YI+RRC TML CW+
Sbjct: 13 AFTSKCVSLVKEQRARLYILRRCATMLCCWY 43
>AT1G53708.1 | chr1:20052530-20053032 FORWARD LENGTH=110
Length = 109
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 43 SFTCRCVRLVKEQRARFYIMRRCVTMLVCWH 73
+FT +C LVKEQRAR YI+RRC TML CW+
Sbjct: 13 AFTSKCASLVKEQRARLYILRRCATMLCCWY 43
>AT2G29125.1 | chr2:12523472-12523819 FORWARD LENGTH=116
Length = 115
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 51 LVKEQRARFYIMRRCVTMLVCWHEY 75
L KEQ+ARFYIMRRCV MLVCWH++
Sbjct: 88 LAKEQKARFYIMRRCVAMLVCWHKH 112
>AT2G36985.1 | chr2:15534943-15535104 REVERSE LENGTH=54
Length = 53
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 34 DGGAGKSRPSFTCRCVRLVKEQRARFYIMRRCVTMLVCWHE 74
+ G + +F +C +VK+QRA+FYI+RRC+ MLVCWH+
Sbjct: 5 ENGTCEPCKTFGQKCSHVVKKQRAKFYILRRCIAMLVCWHD 45
>AT5G59510.1 | chr5:23990089-23990523 FORWARD LENGTH=145
Length = 144
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 30 RSGGDGGAGKSRPSFTCRCVRLVKEQRARFYIMRRCVTMLVCWHEY 75
RS GA +R +C + KE ++RFYIM+RCV MLVCWH++
Sbjct: 100 RSLSQKGASVTR-----KCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140
>AT3G46613.1 | chr3:17165791-17166225 FORWARD LENGTH=145
Length = 144
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 43 SFTCRCVRLVKEQRARFYIMRRCVTMLVCWHEYQ 76
S T +C ++ KE ++RFYI++RCV MLVCWH++
Sbjct: 111 SVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKHS 144
>AT1G07490.1 | chr1:2301526-2301849 REVERSE LENGTH=108
Length = 107
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 44 FTCRCVRLVKEQRARFYIMRRCVTMLVCWHEYQ 76
T + L KEQ+ RFYIMRRCV MLVCWH++
Sbjct: 74 ITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKHD 106
>AT4G13395.1 | chr4:7785883-7786050 REVERSE LENGTH=56
Length = 55
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 44 FTCRCVRLVKEQRARFYIMRRCVTMLVCWHEYQ 76
F RC+ + K+QR R YI+RRCV+ML+CWH++
Sbjct: 20 FGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHS 52
>AT4G35783.1 | chr4:16952612-16952800 FORWARD LENGTH=63
Length = 62
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 48 CVRLVKEQRARFYIMRRCVTMLVCWHEY 75
C+ +VKE+R+RFYI RRC+ ML+CWH+Y
Sbjct: 32 CLAMVKERRSRFYIARRCILMLLCWHKY 59
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.333 0.140 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,566,065
Number of extensions: 50615
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 12
Length of query: 76
Length of database: 11,106,569
Length adjustment: 48
Effective length of query: 28
Effective length of database: 9,790,601
Effective search space: 274136828
Effective search space used: 274136828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 104 (44.7 bits)