BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0840200 Os01g0840200|AK069954
(521 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37570.1 | chr2:15761466-15762950 REVERSE LENGTH=495 571 e-163
AT3G12570.1 | chr3:3989407-3990876 FORWARD LENGTH=490 547 e-156
AT5G02480.1 | chr5:548152-549678 FORWARD LENGTH=509 503 e-143
>AT2G37570.1 | chr2:15761466-15762950 REVERSE LENGTH=495
Length = 494
Score = 571 bits (1472), Expect = e-163, Method: Compositional matrix adjust.
Identities = 291/513 (56%), Positives = 354/513 (69%), Gaps = 34/513 (6%)
Query: 22 HHSLCTLLSMDPAGHLDDRAVGVMVQPRIGDGAGRAHAVSLSGAHPPDIN---------- 71
+H TLLSMD + + M R LSG PPDIN
Sbjct: 3 NHHPSTLLSMDSSASSHEELDLEMNNNR---------QSLLSG--PPDINLPLSAERSPP 51
Query: 72 -QPWQTDLCDMLDVSLGPQIQVYDAEALAVLSSAPKAGNRKAAKRGDSIWGAWFFFTFYF 130
PW D CD+LDV LG Q Y+ E +S PK G RK AKR DSIWGAWFFF+FYF
Sbjct: 52 PPPWNLDACDILDVGLGSQ--AYETEN--YMSVVPKVG-RKCAKRVDSIWGAWFFFSFYF 106
Query: 131 KPLLADKCKGKVTRDANGVSGFDKTDLRLDMFMVQHDMENMYMWVFKERPENALGKMQLR 190
KP L +K K K+ RD+NG+SGFDK+DL+LD+F+VQHDMENMYMWVFKERPENALGKMQLR
Sbjct: 107 KPALNEKSKAKIVRDSNGISGFDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLR 166
Query: 191 SYMNGHSRPGEPQFPFSVDRGFVRSHRMQRKHYRGLSNPQCIHGIEVVRSPNLASITEVD 250
SYMNGHSR G+ FPFSV++GFVRSHRMQRKHYRGLSNPQC+HGIE+V PNL + E +
Sbjct: 167 SYMNGHSRQGDRLFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIELVPLPNLTCLDEEE 226
Query: 251 RRRWVELTGRELNFAIPQEACDFGTWRTMPNTEIELDRPHPVMKGNVHQHPKKXXXXXXX 310
R+RW+ELTGR+LNF IP EA DFG+WR +PNT+ EL+RP P +K H KK
Sbjct: 227 RKRWMELTGRDLNFTIPPEASDFGSWRNLPNTDFELERPTPSLKNPTANHSKKLLNGSGL 286
Query: 311 XXXXXXXXXXE-DGMDLSPVSSKRRKEVFPHAM-DEECFLPLNSCGERTQQDVEMHSVVQ 368
+ DLSP S K+RK++F + + +EEC L +N +E H
Sbjct: 287 NLSTQPSNHSNGEATDLSPSSHKKRKDLFSNGIHEEECCLTVNP----QPPVIEAHQNEL 342
Query: 369 PSWQHEFSGVMKKARGPVTAAKSIYEDDQGYLIMVSLPFVDQQKVKVSWRNSLTHGIVKI 428
P+W +EF+G MK GPVTAAK+IYED++GYLI++SLPFVD VKVSWRN+LTHGI+K+
Sbjct: 343 PTWSNEFTGAMKNVYGPVTAAKTIYEDEEGYLIIISLPFVDLNSVKVSWRNTLTHGIIKV 402
Query: 429 LCVSTAQTPYIRRHDRVFKLADPMPEHCPHGEFVREIPLATRIPEDAKLEAYFDEAAAVL 488
C+ST++ P+I+RHDR FKL D EHCP GEFVREIPL+ RIPEDA +EAY+D +VL
Sbjct: 403 SCLSTSRVPFIKRHDRTFKLTDSASEHCPPGEFVREIPLSNRIPEDANIEAYYDGPGSVL 462
Query: 489 EIMVPKRGNEPEEHEVRVSMRPPHLAANDLLLT 521
EI+VPK PEEHEVRV +R P+L NDL+LT
Sbjct: 463 EILVPKLRAGPEEHEVRVCLR-PNLGGNDLMLT 494
>AT3G12570.1 | chr3:3989407-3990876 FORWARD LENGTH=490
Length = 489
Score = 547 bits (1409), Expect = e-156, Method: Compositional matrix adjust.
Identities = 285/524 (54%), Positives = 352/524 (67%), Gaps = 53/524 (10%)
Query: 1 MGEDLVTTLSMENXXXXXXXXHHSLCTLLSMDPAGHLDDRAVGVMVQPRIGDGAGRAHAV 60
MGE L+TTLSMEN + TLLSMD + + M I G
Sbjct: 1 MGETLITTLSMEN---------YHPSTLLSMDSGAFTHEESERDMNGSLILTG------- 44
Query: 61 SLSGAHPPDINQPWQTDL----------CDMLDVSLGPQIQVYDAEALAVLSSAPKAGNR 110
PPDIN P ++ CD+LDV LGPQ+ Y+ EA+ PK +
Sbjct: 45 ------PPDINLPLSSEARPSLLLWNEHCDILDVGLGPQL--YEPEAVV---HVPKVA-K 92
Query: 111 KAAKRGDSIWGAWFFFTFYFKPLLADKCKGKVTRDANGVSGFDKTDLRLDMFMVQHDMEN 170
K KR DS WGAW FF+FYFKP+L +K K K+TRD+NG+SG+DK+DL+LD F+VQHDMEN
Sbjct: 93 KYNKRVDSAWGAWLFFSFYFKPVLDEKSKSKLTRDSNGLSGYDKSDLQLDSFLVQHDMEN 152
Query: 171 MYMWVFKERPENALGKMQLRSYMNGHSRPGEPQFPFSVDRGFVRSHRMQRKHYRGLSNPQ 230
MYMWVFKE+PENALGKMQLRSYMNGHSR GE FPFSVD+GFVRSHRMQRKHYRGLSNPQ
Sbjct: 153 MYMWVFKEKPENALGKMQLRSYMNGHSREGERPFPFSVDKGFVRSHRMQRKHYRGLSNPQ 212
Query: 231 CIHGIEVVRSPNLASITEVDRRRWVELTGRELNFAIPQEACDFGTWRTMPNTEIELDRPH 290
C+HGIEVV SPNL+ ++E ++++W ELTGR++NFAIP EA D+G+WR +PNTE E +RP
Sbjct: 213 CLHGIEVVYSPNLSVLSEDEKKKWTELTGRDVNFAIPAEASDYGSWRNLPNTEFEAERPL 272
Query: 291 PVMKGNVHQHPKKXXXXXXXXXXXXXXXXXEDGMDLSPVSSKRRKEVFPHAMDEECFLPL 350
P+ K N H H KK D +++ S +RK +C L L
Sbjct: 273 PLAKANGHTHLKKLNGTCLNLSTHSPDHAV-DTVEVQLAGSNKRK--------RDC-LAL 322
Query: 351 NSCGERTQQ----DVEMHSVVQPSWQHEFSGVMKKARGPVTAAKSIYEDDQGYLIMVSLP 406
+C + + D+++H+ P W ++FSGVMK GPVTAAK+IYEDD+G+LI++SLP
Sbjct: 323 GNCDDSSSSEKSLDMKIHATELP-WSNDFSGVMKNVYGPVTAAKTIYEDDRGFLIVMSLP 381
Query: 407 FVDQQKVKVSWRNSLTHGIVKILCVSTAQTPYIRRHDRVFKLADPMPEHCPHGEFVREIP 466
FVD +VKV+WRN+ HGIVKI CVSTA P+I+RHDR FKL DP PEHCP GEFVRE+
Sbjct: 382 FVDSGRVKVTWRNTPAHGIVKISCVSTACEPFIKRHDRTFKLTDPTPEHCPPGEFVREVS 441
Query: 467 LATRIPEDAKLEAYFDEAAAVLEIMVPKRGNEPEEHEVRVSMRP 510
L RIP+DAKLEAY DE LE++VPK PEEHEVRV +RP
Sbjct: 442 LPNRIPDDAKLEAYRDETGTTLEVLVPKHRMGPEEHEVRVCLRP 485
>AT5G02480.1 | chr5:548152-549678 FORWARD LENGTH=509
Length = 508
Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/539 (49%), Positives = 347/539 (64%), Gaps = 56/539 (10%)
Query: 1 MGEDLVTTLSMENXXXXXXXXHHSLCTLLSMDPAGHLDDRAVGVMVQPRIGDGAGRAHAV 60
M ++T LSMEN H TLLSMD +G + + + +G +
Sbjct: 1 MKGSILTVLSMEN---------HHPSTLLSMDSSGSSHEE-----LDLEMNNGNRQ---- 42
Query: 61 SLSGAHPPDINQP---------WQTDLCD-MLDVSLGPQIQVYDAEALAVLSSAPKAGNR 110
++ +PPDIN P W D CD +LDV L VY+ E L+ P +
Sbjct: 43 -ITLYNPPDINLPLSVGRSSPSWNLDSCDNILDVGLSSH--VYETETF--LNVVPSKVAK 97
Query: 111 KAAKRGDSIWGAWFFFTFYFKPLLADKCKGKVTRDANG--------VSGFDKTDLRLDMF 162
K KRGDS+WGAWFFF+FYF+P L +K K KV R++ G +GFDK+DL+LD+F
Sbjct: 98 KCLKRGDSMWGAWFFFSFYFRPALNEKSKSKVIRESGGGGGGGGGCFTGFDKSDLKLDVF 157
Query: 163 MVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRPGEPQFPFSVDRGFVRSHRMQRKH 222
+VQHDMENMYMW FK++PENALGKMQLRSYMNGHSR GE FPFS ++GFVRSHRMQRKH
Sbjct: 158 LVQHDMENMYMWAFKDKPENALGKMQLRSYMNGHSRQGERPFPFSAEKGFVRSHRMQRKH 217
Query: 223 YRGLSNPQCIHGIEVVRSPNLASITEVDRRRWVELTGRELNFAIPQEACDFGTWRTMPNT 282
YRGLSNPQC+HGIE V SP+L + E D++RW+ELTGR+L F IP +A DFG+WR +PNT
Sbjct: 218 YRGLSNPQCLHGIEFVASPSLFGVGEEDKKRWMELTGRDLKFTIPPDASDFGSWRNLPNT 277
Query: 283 EIELDRPHPVMKGNVHQHPKKXXXXXXXXXXXXXXXXXEDGMDLSP----VSSKRRKEVF 338
+IEL+RP V K + K D D SP +++K+RKE
Sbjct: 278 DIELERPAHVTKAAPNNAKKILNGSGLHLTSNASFSSNGDSSDQSPGGGVINNKKRKEFL 337
Query: 339 -PHAMDEECFLPLNSCGERTQQDVEMHSVVQ-PSWQHEFSGVMKKARGPVTAAKSIYEDD 396
P + +EEC L +N ++E H PSW ++F+GVMK + GPVTAAK++YED+
Sbjct: 338 SPGSSEEECCLTVN--------NIETHHAKDPPSWVNDFTGVMKNSCGPVTAAKTVYEDE 389
Query: 397 QGYLIMVSLPFVDQQKVKVSWRNSLTHGIVKILCVSTAQTPYIRRHDRVFKLADPMPEHC 456
+ YL++++LPFVD VKVSWRN++T+GIVK+ +ST++ +++R DR FKL D M EHC
Sbjct: 390 EAYLVVITLPFVDLNTVKVSWRNNITNGIVKVTGLSTSRASFVKRRDRTFKLVDQMAEHC 449
Query: 457 PHGEFVREIPLATRIPEDAKLEAYFDEAAAVLEIMVPK-RGNEPEEHEVRVSMRPPHLA 514
P GEF+REI L RIPE+A +EAYFD VLEI+VPK RG EEHEVRV +R HL
Sbjct: 450 PPGEFMREIQLPNRIPEEANIEAYFDGTGPVLEIVVPKLRGGVEEEHEVRVCLRSHHLG 508
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,458,866
Number of extensions: 470661
Number of successful extensions: 786
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 3
Length of query: 521
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 418
Effective length of database: 8,282,721
Effective search space: 3462177378
Effective search space used: 3462177378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)