BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0837800 Os01g0837800|AK064840
(415 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39450.1 | chr2:16471744-16473735 REVERSE LENGTH=395 556 e-159
AT1G79520.2 | chr1:29912369-29914515 REVERSE LENGTH=415 441 e-124
AT1G16310.1 | chr1:5578435-5580585 FORWARD LENGTH=429 433 e-122
AT3G58060.1 | chr3:21497778-21499676 REVERSE LENGTH=412 330 7e-91
>AT2G39450.1 | chr2:16471744-16473735 REVERSE LENGTH=395
Length = 394
Score = 556 bits (1434), Expect = e-159, Method: Compositional matrix adjust.
Identities = 283/374 (75%), Positives = 314/374 (83%), Gaps = 3/374 (0%)
Query: 40 EKSWRLNFDGFXXXXXXXXXXXXXGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFNEMD 99
++SW+LNFD F LH+ CLG L GPED VA+YYQQQVEMLEGF EMD
Sbjct: 23 DRSWQLNFDDFQVSPEHKEKKSPSKLHN-CLGCL--GPEDNVADYYQQQVEMLEGFTEMD 79
Query: 100 TLTDRGFLPGMSKEEREKVARSETLAIRLSNIANMVLFAAKVYASVRSGSLAIIASTXXX 159
L +RGF+PGMSKEE++ +A+SETLAIR+SNIANM+LFAAKVYASV SGSLAIIAST
Sbjct: 80 ELAERGFVPGMSKEEQDNLAKSETLAIRISNIANMLLFAAKVYASVTSGSLAIIASTLDS 139
Query: 160 XXXXXXGFILWFTAFSMQTPNPYRYPIGKKRMQPLGILVFASVMATLGLQIILESVRSLL 219
GFILWFTAFSMQTPNPY+YPIGKKRMQPLGILVFASVMATLGLQIILES+R++L
Sbjct: 140 LLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTML 199
Query: 220 SDGDEFSLTKEQEKWVVDIMXXXXXXXXXXXXYCRTFTNEIVKAYAQDHFFDVITNMIGL 279
S EF+LTKEQE WVV IM YCR+FTNEIVKAYAQDHFFDVITN+IGL
Sbjct: 200 SSHKEFNLTKEQESWVVGIMLSVTLVKLLLVLYCRSFTNEIVKAYAQDHFFDVITNIIGL 259
Query: 280 VAALLATYIEGWIDPVGAIILAIYTIRTWSMTVLENVHSLVGQSASPEYLQKLTYLCWNH 339
+A +LA YI+ WIDPVGAIILA+YTIRTWSMTVLENV+SLVG+SA PEYLQKLTYLCWNH
Sbjct: 260 IAVILANYIDYWIDPVGAIILALYTIRTWSMTVLENVNSLVGKSARPEYLQKLTYLCWNH 319
Query: 340 HKAVRHIDTVRAYTFGSHYFVEVDIVLPSSMPLQEAHDIGEALQEKLERLPEIERAFVHL 399
HKA+RHIDTVRAYTFGSHYFVEVDIVLP+ MPLQ AHDIGE+LQEKLE L EIERAFVHL
Sbjct: 320 HKAIRHIDTVRAYTFGSHYFVEVDIVLPADMPLQVAHDIGESLQEKLELLEEIERAFVHL 379
Query: 400 DYEFTHRPEHALSH 413
DYE+TH+PEHA SH
Sbjct: 380 DYEYTHKPEHARSH 393
>AT1G79520.2 | chr1:29912369-29914515 REVERSE LENGTH=415
Length = 414
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/334 (63%), Positives = 263/334 (78%), Gaps = 4/334 (1%)
Query: 78 EDVVAEYYQQQVEMLEGFNEMDTLTDRGFLPGM-SKEEREKVARSETLAIRLSNIANMVL 136
E V+EYY+QQ ++LEGFNEM+T+ + GF+ G ++EE +K+A+SE LA+ +SN AN+VL
Sbjct: 79 ERKVSEYYKQQEKLLEGFNEMETINETGFVSGAPTEEELKKLAKSERLAVHISNAANLVL 138
Query: 137 FAAKVYASVRSGSLAIIASTXXXXXXXXXGFILWFTAFSMQTPNPYRYPIGKKRMQPLGI 196
F AKVYASV S S+A+IAST GFILWFTA +M+TPN +RYPIGK+RMQP+GI
Sbjct: 139 FVAKVYASVESRSMAVIASTLDSLLDLLSGFILWFTANAMRTPNNFRYPIGKRRMQPVGI 198
Query: 197 LVFASVMATLGLQIILESVRSLLS-DGDEFSLTKEQEKWVVDIMXXXXXXXXXXXXYCRT 255
+VFASVMATLGLQ+ILES R L+S +G S T +EKW++ IM YCR+
Sbjct: 199 IVFASVMATLGLQVILESTRLLVSKNGSHMSST--EEKWMIGIMASATVVKFLLMLYCRS 256
Query: 256 FTNEIVKAYAQDHFFDVITNMIGLVAALLATYIEGWIDPVGAIILAIYTIRTWSMTVLEN 315
F NEIV+AYAQDH FDVITN +GL A+LA WIDP GAI++A+YTI TW+ TVLEN
Sbjct: 257 FQNEIVRAYAQDHLFDVITNSVGLATAVLAVKFYWWIDPSGAILIALYTISTWARTVLEN 316
Query: 316 VHSLVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSHYFVEVDIVLPSSMPLQEA 375
VHSL+G+SA P++L KLT+L WNHH+ ++HIDTVRAYTFGSHYFVEVDIVLP M L EA
Sbjct: 317 VHSLIGRSAPPDFLAKLTFLIWNHHEKIKHIDTVRAYTFGSHYFVEVDIVLPEDMRLHEA 376
Query: 376 HDIGEALQEKLERLPEIERAFVHLDYEFTHRPEH 409
H+IGE LQEKLE+L E+ERAFVH+D+EFTHRPEH
Sbjct: 377 HNIGETLQEKLEQLSEVERAFVHIDFEFTHRPEH 410
>AT1G16310.1 | chr1:5578435-5580585 FORWARD LENGTH=429
Length = 428
Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/376 (56%), Positives = 268/376 (71%), Gaps = 14/376 (3%)
Query: 40 EKSWRLNFDGFXXXXXXXXXXXXXGLHHHCLGVLSQ-----GPEDVVAEYYQQQVEMLEG 94
E SWRLN D F G H S+ E V+EYY++Q +LEG
Sbjct: 58 ESSWRLNLDAFQLPSST-------GGRHDGRTRFSRYFRTPRKERRVSEYYKKQERLLEG 110
Query: 95 FNEMDTLTDRGFLPGM-SKEEREKVARSETLAIRLSNIANMVLFAAKVYASVRSGSLAII 153
FNEM+T+ + GF G+ ++EE +K+A+SE LA+ +SN N+VLF AKVYAS+ S S+A+I
Sbjct: 111 FNEMETIHENGFASGVPTEEEMKKLAKSERLAVHISNATNLVLFVAKVYASMESRSMAVI 170
Query: 154 ASTXXXXXXXXXGFILWFTAFSMQTPNPYRYPIGKKRMQPLGILVFASVMATLGLQIILE 213
AST GFILWFTA +M+ PN + YPIGK+RMQP+GI+VFASVMATLGLQ++LE
Sbjct: 171 ASTLDSLLDLLSGFILWFTANAMRKPNQFHYPIGKRRMQPVGIIVFASVMATLGLQVLLE 230
Query: 214 SVRSLLSDGDEFSLTKEQEKWVVDIMXXXXXXXXXXXXYCRTFTNEIVKAYAQDHFFDVI 273
S R L++ + +EKW++ IM YCR F NEIV+AYAQDH FDV+
Sbjct: 231 SGRQLVAKSG-IHMNSTEEKWMIGIMVSVTIVKFLLMLYCRGFQNEIVRAYAQDHLFDVV 289
Query: 274 TNMIGLVAALLATYIEGWIDPVGAIILAIYTIRTWSMTVLENVHSLVGQSASPEYLQKLT 333
TN IGL A+LA WIDP GAI++A+YTI TW+ TVLENVHSL+G+SA P++L KLT
Sbjct: 290 TNSIGLATAVLAVKFYWWIDPTGAILIALYTIATWARTVLENVHSLIGRSAPPDFLAKLT 349
Query: 334 YLCWNHHKAVRHIDTVRAYTFGSHYFVEVDIVLPSSMPLQEAHDIGEALQEKLERLPEIE 393
+L WNHH+ ++HIDTVRAYTFGSHYFVEVDIVLP M LQEAH+IGE LQEKLE+L E+E
Sbjct: 350 FLIWNHHEQIKHIDTVRAYTFGSHYFVEVDIVLPEDMRLQEAHNIGETLQEKLEQLAEVE 409
Query: 394 RAFVHLDYEFTHRPEH 409
RAFVH+D+EFTHRPEH
Sbjct: 410 RAFVHIDFEFTHRPEH 425
>AT3G58060.1 | chr3:21497778-21499676 REVERSE LENGTH=412
Length = 411
Score = 330 bits (847), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/333 (50%), Positives = 226/333 (67%), Gaps = 4/333 (1%)
Query: 83 EYYQQQVEMLEGFNEMDTL---TDRGFLPGMSKEEREKVARSETLAIRLSNIANMVLFAA 139
EYY++Q+ L+ F E+++ +D + +EE ++ LA+++SN AN+ L A
Sbjct: 71 EYYERQLATLKSFEEVESFLARSDEYTIDEKEEEEDRAERAAQELAMQISNWANIFLLAL 130
Query: 140 KVYASVRSGSLAIIASTXXXXXXXXXGFILWFTAFSMQTPNPYRYPIGKKRMQPLGILVF 199
K+YA+V+SGS+AI AST G ILWFT SM+ N Y+YPIGK R+QP+GI++F
Sbjct: 131 KIYATVKSGSIAIAASTLDSLLDLMAGGILWFTHLSMKNVNIYKYPIGKLRVQPVGIIIF 190
Query: 200 ASVMATLGLQIILESVRSLLSDGDEFSLTKEQEKWVVDIMXXXXXXXXXXXXYCRTFTNE 259
A+VMATLG Q++L + L+S+ + Q W+ IM YC++ N
Sbjct: 191 AAVMATLGFQVLLVAAEQLISNEPSEKMNHVQLIWLYSIMLSATAIKLVLWIYCKSSRNH 250
Query: 260 IVKAYAQDHFFDVITNMIGLVAALLATYIEGWIDPVGAIILAIYTIRTWSMTVLENVHSL 319
IV+AYA+DH FDV+TN++GLVAA+LA W+DP GAI+LAIYTI WS TV+EN SL
Sbjct: 251 IVRAYAKDHHFDVVTNVLGLVAAVLANAFYWWLDPTGAILLAIYTIVNWSGTVMENAVSL 310
Query: 320 VGQSASPEYLQKLTYLCWNH-HKAVRHIDTVRAYTFGSHYFVEVDIVLPSSMPLQEAHDI 378
+GQSA PE LQKLTYL ++H+DTVRAYTFG YFVEVDI LP +PL+EAH I
Sbjct: 311 IGQSAPPEVLQKLTYLVMRQGGDNIKHVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAI 370
Query: 379 GEALQEKLERLPEIERAFVHLDYEFTHRPEHAL 411
GE+LQ KLE LPE+ERAFVHLD+E H+PEH++
Sbjct: 371 GESLQIKLEELPEVERAFVHLDFECHHKPEHSV 403
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,028,149
Number of extensions: 254566
Number of successful extensions: 579
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 4
Length of query: 415
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,337,553
Effective search space: 2617991642
Effective search space used: 2617991642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)