BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0837500 Os01g0837500|AK105439
(455 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22330.1 | chr5:7391026-7394071 REVERSE LENGTH=459 788 0.0
AT3G49830.1 | chr3:18482383-18483940 FORWARD LENGTH=474 338 3e-93
AT5G67630.1 | chr5:26967535-26969306 REVERSE LENGTH=470 336 2e-92
>AT5G22330.1 | chr5:7391026-7394071 REVERSE LENGTH=459
Length = 458
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/455 (84%), Positives = 413/455 (90%)
Query: 1 MRIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKK 60
++IEE+QS AKKQRIATHTHIKGLGL+ G I LA+GFVGQ AREAAGLVVDMI+QKK
Sbjct: 4 VKIEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKK 63
Query: 61 MXXXXXXXXXXXXTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI 120
M TGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI
Sbjct: 64 MAGKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI 123
Query: 121 GLRIKENKEVYEGEVTELSPEEAESTTSGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 180
GLRIKE KEVYEGEVTELSPEE ES T GYGKSISHV+I LKTVKGTK LKLDPTIYDAL
Sbjct: 124 GLRIKETKEVYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHLKLDPTIYDAL 183
Query: 181 IKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEAEEYVPIPKGEVHKKKEIVQDVTL 240
IKEKVAVGDVIYIEANSGAVKRVGR D+FATE+DLEAEEYVP+PKGEVHKKKEIVQDVTL
Sbjct: 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL 243
Query: 241 HDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGIAELVPGVLF 300
DLDAANA+PQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEG+AELVPGVLF
Sbjct: 244 QDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLF 303
Query: 301 IDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHGIPVDLLDRLVII 360
IDEVHMLD+ECFSYLNRALES LSPIVI ATNRG+CNVRGTDM SPHG+P+DLLDRLVII
Sbjct: 304 IDEVHMLDMECFSYLNRALESSLSPIVIFATNRGVCNVRGTDMPSPHGVPIDLLDRLVII 363
Query: 361 RTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQLLSPASVVAKANG 420
RT+ Y P+EMIQI+AIRAQVEE+ +DEE L LGEIGQ+TSLRHA+QLLSPAS+VAK NG
Sbjct: 364 RTQIYDPSEMIQIIAIRAQVEELTVDEECLVLLGEIGQRTSLRHAVQLLSPASIVAKMNG 423
Query: 421 REKISKADLEEVSGLYLDAKSSARLLQEQQERYIT 455
R+ I KAD+EEV+ LYLDAKSSA+LL EQQE+YI+
Sbjct: 424 RDNICKADIEEVTSLYLDAKSSAKLLHEQQEKYIS 458
>AT3G49830.1 | chr3:18482383-18483940 FORWARD LENGTH=474
Length = 473
Score = 338 bits (867), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 185/456 (40%), Positives = 280/456 (61%), Gaps = 12/456 (2%)
Query: 1 MRIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKK 60
+R+ E + + +RI H+HI+GLGLD+ ++ G VGQ AR+AAG+ +++IR K
Sbjct: 4 LRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIRDGK 63
Query: 61 MXXXXXXXXXXXXTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI 120
+ TGK A+A+GI++ LG + PF + GSE++S E+ KTE L + FR+AI
Sbjct: 64 ISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFRKAI 123
Query: 121 GLRIKENKEVYEGEVTELSPEEAESTTSGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 180
G+RIKE +V EGEV +S + S+ K+ I +KT L + + L
Sbjct: 124 GVRIKEETDVIEGEVVTISIDRPASSGGSVKKTGK---ITMKTTDMESNFDLGWKLIEPL 180
Query: 181 IKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDL--EAEEYVPIPKGEVHKKKEIVQDV 238
KEKV GDVI ++ G + ++GR + + ++D+ ++V P+GE+ K+KE++ V
Sbjct: 181 DKEKVQSGDVIVLDRFCGKITKLGRSFTRSRDFDVMGSKTKFVQCPEGELEKRKEVLHSV 240
Query: 239 TLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGIAELVPGV 298
TLH++D N++ QG L+L EI + R++ + V + +EG AE+VPGV
Sbjct: 241 TLHEIDVINSRTQG---YLALF----TGDTGEIRSETREQSDTKVAEWREEGKAEIVPGV 293
Query: 299 LFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHGIPVDLLDRLV 358
LFIDEVHMLDIECFS+LNRALE+ +SPI+++ATNRG+ +RGT+ S HGIP+D LDRL+
Sbjct: 294 LFIDEVHMLDIECFSFLNRALENDMSPILVVATNRGMTTIRGTNQISAHGIPIDFLDRLL 353
Query: 359 IIRTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQLLSPASVVAKA 418
II T+ Y E+ IL IR Q E++E++EE+ L IG TSLR+AI L++ A++
Sbjct: 354 IITTQPYTQDEIRNILEIRCQEEDVEMNEEAKQLLTLIGCNTSLRYAIHLINAAALACLK 413
Query: 419 NGREKISKADLEEVSGLYLDAKSSARLLQEQQERYI 454
+ + D+E V L+LD K S + L E + Y+
Sbjct: 414 RKGKVVEIQDIERVYRLFLDTKRSMQYLVEHESEYL 449
>AT5G67630.1 | chr5:26967535-26969306 REVERSE LENGTH=470
Length = 469
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/458 (41%), Positives = 293/458 (63%), Gaps = 17/458 (3%)
Query: 1 MRIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKK 60
+++ E + + +RI H+HI+GLGLD+ ++ G VGQ AR+AAG+++ MIR+ K
Sbjct: 4 LKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIREGK 63
Query: 61 MXXXXXXXXXXXXTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAI 120
+ TGKTA+A+G+++ LG + PF + GSE++S E+ KTE L ++FR+AI
Sbjct: 64 IAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFRKAI 123
Query: 121 GLRIKENKEVYEGEVTELSPEEAEST--TSGYGKSISHVIIGLKTVKGTKQLKLDPTIYD 178
G+RIKE EV EGEV E+ + S+ S GK + +KT + + +
Sbjct: 124 GVRIKEETEVIEGEVVEVQIDRPASSGVASKSGK------MTMKTTDMETVYDMGAKMIE 177
Query: 179 ALIKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEAEE--YVPIPKGEVHKKKEIVQ 236
AL KEKV GDVI I+ +G + ++GR S + +YD + +V P+GE+ K+KE+V
Sbjct: 178 ALNKEKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVH 237
Query: 237 DVTLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGIAELVP 296
VTLH++D N++ QG L+L EI ++R++I+ V + +EG AE+VP
Sbjct: 238 CVTLHEIDVINSRTQG---FLALF----TGDTGEIRSEVREQIDTKVAEWREEGKAEIVP 290
Query: 297 GVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHGIPVDLLDR 356
GVLFIDEVHMLDIECFS+LNRALE+ +SPI+++ATNRG+ +RGT+ SPHGIP+DLLDR
Sbjct: 291 GVLFIDEVHMLDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHGIPIDLLDR 350
Query: 357 LVIIRTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQLLSPASVVA 416
L+II T+ Y ++ +IL IR Q E++E++EE+ L IG+ TSLR+AI L++ A++
Sbjct: 351 LLIITTQPYTDDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSC 410
Query: 417 KANGREKISKADLEEVSGLYLDAKSSARLLQEQQERYI 454
+ + + D++ V L+LD + S + L E Q +Y+
Sbjct: 411 QKRKGKVVEVEDIQRVYRLFLDVRRSMQYLVEYQSQYM 448
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,600,796
Number of extensions: 346246
Number of successful extensions: 804
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 798
Number of HSP's successfully gapped: 3
Length of query: 455
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,310,137
Effective search space: 2933478361
Effective search space used: 2933478361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)