BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0833700 Os01g0833700|Z67962
(518 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05010.1 | chr5:1477137-1479872 FORWARD LENGTH=528 633 0.0
>AT5G05010.1 | chr5:1477137-1479872 FORWARD LENGTH=528
Length = 527
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/534 (59%), Positives = 397/534 (74%), Gaps = 23/534 (4%)
Query: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
MVVLAA+I+ KSGK +VSR +VDMSRIRI+GLLAAFPKLVG GKQHTY+ETENVRYVYQP
Sbjct: 1 MVVLAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQP 60
Query: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKXXXXXXXXXXXXXSLG 120
IEAL+LLL+T KQSNILEDL TL LLSKL+PEY+ SLDEEG+ + SLG
Sbjct: 61 IEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLG 120
Query: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGG 180
+KE+VTVAQVKQYCEMESHEEKLHKLVMQSKIN+TKDVM+RK EI+KSK ++ KP GG
Sbjct: 121 HKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNKP--GG 178
Query: 181 F------GSLRTPNSFSXXXXXXXXXXXXXXXXXXXSFTH------KAKGRXXXXXXXXX 228
F GS R + F+ + K K R
Sbjct: 179 FSSMGSMGSGRLESGFNELSISSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPP 238
Query: 229 XTKVPGGMKLSKAQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKL 288
+ GMKL K+ K NQ +ESLKAEGE ++ED +P+ QS+++ PP+DP T+T+EEKL
Sbjct: 239 KSS---GMKLGKSGK-NQLMESLKAEGEDVIEDVKPTG-QSKAAAPPPTDPFTLTVEEKL 293
Query: 289 NVTVKRDGGVSNFDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQ 348
NV ++RDGG+S+FD+QGTL+LQILN DGF+Q+QI + P + FKTHPNIN+++FN++
Sbjct: 294 NVALRRDGGLSSFDMQGTLSLQILNQEDGFVQVQIATGENPEILFKTHPNINRDMFNNEN 353
Query: 349 IVGAKDPNRPFPSGQ--NETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASE 406
I+G K P++PFP+GQ + L++WR+Q +ES +PL +NCWPSVSGNETYV++EYEAS
Sbjct: 354 ILGLKRPDQPFPTGQGGDGVGLLRWRMQRADESMVPLTINCWPSVSGNETYVSLEYEASS 413
Query: 407 MFDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPA 466
MFDL NV+IS+PLPALREAP VRQ DGEWRYD RNSVLEWSI+L+D SNRSGS+EF VP
Sbjct: 414 MFDLTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSILLIDNSNRSGSMEFVVPP 473
Query: 467 ADPSTFFPISVGFSASNTFSDLKVTAIRPLR--EGSPPKFSQRNRLVTYNYQVV 518
D S FFPISV F+A++T+S LKVT + PLR G+ P+F QR +L+ NYQV+
Sbjct: 474 VDSSVFFPISVQFAATSTYSGLKVTGMIPLRGGGGATPRFVQRTQLIAQNYQVI 527
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,142,777
Number of extensions: 409785
Number of successful extensions: 903
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 2
Length of query: 518
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 415
Effective length of database: 8,282,721
Effective search space: 3437329215
Effective search space used: 3437329215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)