BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0833100 Os01g0833100|AK068946
(312 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55960.1 | chr3:20760797-20762892 REVERSE LENGTH=306 306 7e-84
AT1G29770.1 | chr1:10424806-10425642 FORWARD LENGTH=279 85 5e-17
AT1G29780.1 | chr1:10426950-10427615 FORWARD LENGTH=222 82 2e-16
AT5G45700.1 | chr5:18537378-18538196 FORWARD LENGTH=273 80 1e-15
AT5G11860.1 | chr5:3822024-3823395 REVERSE LENGTH=306 77 8e-15
AT5G46410.2 | chr5:18826007-18828156 FORWARD LENGTH=457 76 2e-14
AT4G18140.1 | chr4:10046718-10049052 REVERSE LENGTH=447 74 8e-14
AT1G55900.1 | chr1:20903163-20905420 FORWARD LENGTH=377 72 4e-13
>AT3G55960.1 | chr3:20760797-20762892 REVERSE LENGTH=306
Length = 305
Score = 306 bits (785), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 155/287 (54%), Positives = 189/287 (65%), Gaps = 24/287 (8%)
Query: 33 GWIGFLLQVLLQILRGTPSCAQLLSFVGFRYPLLSGPADSEQS-----PSVAFMPLRSEI 87
W+ F Q+ LQILR VG+ +PLLS A + P++ + SE
Sbjct: 24 NWLAFFYQIFLQILRA----------VGY-HPLLSSSAKASADGFKPLPAIELLDRASES 72
Query: 88 XXXXXXXXXXXXES--------LQRXXXXXXXXXXXXSAYESSSLPAIVRTQAVEAGLHC 139
+S QR AYE+SSLPA +R QA+EAGL
Sbjct: 73 PTTVEIAATTTSDSCSDGARSRFQRLKVVLDLDETLVCAYETSSLPAALRNQAIEAGLKW 132
Query: 140 FDMECISTEKDVEGRNKVNHVTVFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRI 199
F++EC+ST+K+ +G+ K+N+VTVFERPGLHEFL++ SEFADLILFTAGLEGYARPLVDRI
Sbjct: 133 FELECLSTDKEYDGKPKINYVTVFERPGLHEFLEQLSEFADLILFTAGLEGYARPLVDRI 192
Query: 200 DVHNRFKLRLYRPSTVTTEYREHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPF 259
D RLYRPSTV+T+YR+HVKDL SK+ CR VIVDNNPFSF+LQP NGIPC+ F
Sbjct: 193 DTRKVLTNRLYRPSTVSTQYRDHVKDLLSTSKNMCRTVIVDNNPFSFLLQPSNGIPCIAF 252
Query: 260 SAGQHNDNQLMEVIFPLLKHLSIQRDVRPALYERFHMPEWFQKHGIP 306
SAGQ ND QL++VI PLLK LS + DVRP LY+RF MPEWF+K GIP
Sbjct: 253 SAGQPNDTQLLDVILPLLKQLSEEDDVRPTLYDRFRMPEWFEKQGIP 299
>AT1G29770.1 | chr1:10424806-10425642 FORWARD LENGTH=279
Length = 278
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Query: 162 VFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNRFKLRLYRPSTVTTEYRE 221
V +RPG+ EFL++ S+ + +FTAGL YA ++D++D + RLYR S R
Sbjct: 143 VVKRPGVTEFLERISKNYRVAIFTAGLPEYASQVLDKLDKNRVISQRLYRDSCTEVNGR- 201
Query: 222 HVKDLSCVSK-DFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEV 272
+ KDLS V+K D V++VD+NPFS+ LQP NG+P PF D +LM++
Sbjct: 202 YAKDLSLVAKNDLGSVLLVDDNPFSYSLQPDNGVPIKPF-MDDMEDQELMKL 252
>AT1G29780.1 | chr1:10426950-10427615 FORWARD LENGTH=222
Length = 221
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
Query: 162 VFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNRFKLRLYRPSTVTTEYRE 221
V +RPG+ EFL++ E +++FTAGLE YA ++D++D + RLYR S +
Sbjct: 89 VVKRPGVTEFLERLGENYKVVVFTAGLEEYASQVLDKLDKNGVISQRLYRDSCTEVNGK- 147
Query: 222 HVKDLS-CVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHL 280
+VKDLS V KD +IVD+NP S+ LQP NG+P F D +L+ ++ L+
Sbjct: 148 YVKDLSLVVGKDLRSALIVDDNPSSYSLQPENGVPIKAF-VDDLKDQELLNLV-EFLESC 205
Query: 281 SIQRDVRPAL 290
D+R A+
Sbjct: 206 YAYEDMRDAV 215
>AT5G45700.1 | chr5:18537378-18538196 FORWARD LENGTH=273
Length = 272
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 162 VFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNRFKLR-LYRPSTVTTEYR 220
V +RPG+ EFL+K E +++FTAGL YA ++D++D R R YR + + R
Sbjct: 137 VIKRPGVDEFLKKIGEKYQIVVFTAGLREYASLVLDKLDPERRVISRSFYRDACSEIDGR 196
Query: 221 EHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFS 260
VKDL V +D RVVIVD+NP S+ LQP N P PFS
Sbjct: 197 -LVKDLGFVMRDLRRVVIVDDNPNSYALQPENAFPIKPFS 235
>AT5G11860.1 | chr5:3822024-3823395 REVERSE LENGTH=306
Length = 305
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 165 RPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNR-FKLRLYRPSTVTTEYREHV 223
RP L EF+++ S ++I+FTA YA L++ +D + F+ R+YR S V + ++
Sbjct: 153 RPHLKEFMERVSRLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVYRDSCVFFD-GNYL 211
Query: 224 KDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHLSIQ 283
KDLS + +D RV+IVDN+P +F Q NG+P + +D +L+ ++ P L+ L
Sbjct: 212 KDLSVLGRDLSRVIIVDNSPQAFGFQVENGVPIESW-FNDPSDKELLHLL-PFLESLIGV 269
Query: 284 RDVRPALYERFHMPE 298
DVRP + ++F++ E
Sbjct: 270 EDVRPMIAKKFNLRE 284
>AT5G46410.2 | chr5:18826007-18828156 FORWARD LENGTH=457
Length = 456
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
Query: 158 NHVTVFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNRF-KLRLYRPSTVT 216
N V V +RP L+ FL++ E +++FTA YA L+D +D +F R YR S +
Sbjct: 318 NTVYVRQRPHLYRFLERVGELFHVVIFTASHSIYASQLLDILDPDGKFISQRFYRDSCIL 377
Query: 217 TEYREHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPL 276
+ + KDL+ + D +V I+DN P + LQ NGIP + +D + I P
Sbjct: 378 LD-GIYTKDLTVLGLDLAKVAIIDNCPQVYRLQINNGIPIKSWYDDPTDDGLI--TILPF 434
Query: 277 LKHLSIQRDVRPALYERFHMPE 298
L+ L++ DVRP + RF E
Sbjct: 435 LETLAVADDVRPIIGRRFGNKE 456
>AT4G18140.1 | chr4:10046718-10049052 REVERSE LENGTH=447
Length = 446
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 158 NHVTVFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNRF-KLRLYRPSTVT 216
N V V +RP L+ FL++ E +++FTA YA L+D +D +F R YR S +
Sbjct: 303 NTVYVKQRPYLYRFLERVVELFHVVIFTASHSIYASQLLDILDPDGKFVSQRFYRDSCIL 362
Query: 217 TEYREHVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPL 276
++ + KDL+ + D +V IVDN P + LQ NGIP + +D + + P
Sbjct: 363 SD-GIYTKDLTVLGLDLAKVAIVDNCPQVYRLQINNGIPIKSWYDDPTDDGLI--TLLPF 419
Query: 277 LKHLSIQRDVRPALYERF 294
L+ L+ DVRP + +RF
Sbjct: 420 LETLADANDVRPVIAKRF 437
>AT1G55900.1 | chr1:20903163-20905420 FORWARD LENGTH=377
Length = 376
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 84/148 (56%), Gaps = 7/148 (4%)
Query: 162 VFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRIDVHNRFKLRLYRPSTVTTEYRE 221
F+RPG+ FL+ +F ++++++ +E Y P+ +++D + + +L R +T E +
Sbjct: 214 TFKRPGVDAFLEHLGKFYEIVVYSDQMEMYVLPVCEKLDPNGYIRYKLARGAT-KYENGK 272
Query: 222 HVKDLSCVSKDFCRVVIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHLS 281
H +DLS +++D +++ V N F LQP N +P P+ + +D L+++I P L++++
Sbjct: 273 HYRDLSKLNRDPKKILFVSANAFESTLQPENSVPIKPYKL-EADDTALVDLI-PFLEYVA 330
Query: 282 IQR--DVRPAL--YERFHMPEWFQKHGI 305
D+RP L +ER + + F I
Sbjct: 331 RNSPADIRPVLASFERKDIAKEFIDRSI 358
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,631,906
Number of extensions: 210778
Number of successful extensions: 402
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 8
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)