BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0831200 Os01g0831200|AK070208
(262 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270 213 9e-56
AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343 131 4e-31
AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304 129 1e-30
AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297 109 1e-24
AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164 101 4e-22
AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166 95 5e-20
>AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270
Length = 269
Score = 213 bits (541), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 161/264 (60%), Gaps = 19/264 (7%)
Query: 16 EGEWEVRPGGMLVQRRD----GDTGP-------------AVRLRVSHGASFRDVAVPAHS 58
E EWEVRPGGMLVQRRD D P +R+ VSHG+S D+ + AH+
Sbjct: 8 ESEWEVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLHISAHA 67
Query: 59 TFGELKGVLTQATGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKXXXXEKPAPANVEQR 118
TFG++K L Q TG+E ++ FRG E+ D E L AGVKD +K + VEQ
Sbjct: 68 TFGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQ- 126
Query: 119 AEPVIMDESMMKACEAVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVXXXXXXXXX 178
+P ++ + M KA AV V EVD+LS +V LE +V G ++ ++F +
Sbjct: 127 -QPPVVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQL 185
Query: 179 XXXDGIEAEGEARAQRKAEVRRVQGLVETLDKLKARNANPFSDQNKSVSVTTQWETFDNG 238
DGIEAEG+A+ QRKAEVRR+Q L E +DKLKAR +NPF DQ+K+ +V+T+WE+F NG
Sbjct: 186 LKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNPFVDQSKAAAVSTEWESFGNG 245
Query: 239 MGSLNAPPPRVSSTQINTDWEQFD 262
+GSLN PPP S + DWE+FD
Sbjct: 246 VGSLNPPPPASPSANVTQDWEKFD 269
>AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343
Length = 342
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 18 EWEVRPGGMLVQRRDGDTGPA-------VRLRVSHGASFRDVAVPAHSTFGELKGVLTQA 70
+ E+RPGGMLVQ+R+ D P +R+R+ +GA + ++ + ++FGELK +LT
Sbjct: 39 DLEIRPGGMLVQKRNPDLDPVGPPPPPMIRVRIKYGAVYHEINISPQASFGELKKMLTGP 98
Query: 71 TGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKXXXXEKPAPANVEQRAEPVIMDESMMK 130
TG+ + Q+L ++ KE+ FL +GVKD +K E P E+R + K
Sbjct: 99 TGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQ--EKRFLEMRKIAKTEK 156
Query: 131 ACEAVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVXXXXXXXXXXXXDGIEAEGEA 190
A +A+ + EVDRL +V E G KI +KD V D I AEG+
Sbjct: 157 ASKAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDAIVAEGDV 216
Query: 191 RAQRKAEVRRVQGLVETLDKLKARNANPFSDQNKS 225
+ QRK +V+RVQ VETLD LK +N+ Q +S
Sbjct: 217 KLQRKMQVKRVQNYVETLDALKVKNSMANGQQKQS 251
>AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304
Length = 303
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 5/221 (2%)
Query: 17 GEWEVRPGGMLVQRR---DGDTGPAVRLRVSHGASFRDVAVPAHSTFGELKGVLTQATGV 73
EWE RPGGM+VQRR + D R+RV +G+ + ++ + + S+FGELK +L+ G+
Sbjct: 20 NEWESRPGGMVVQRRTDQNSDVPRVFRVRVKYGSVYHEININSQSSFGELKKMLSDQVGL 79
Query: 74 EPERQRLFFRGKEKSDNEFLHTAGVKDGAKXXXXEKPAPANVEQRAEPVIMDESMMKACE 133
E ++ ++ KE+ FL GVKD +K E P E+R + ++ KA +
Sbjct: 80 HHEDMKVLYKDKERDSKMFLDLCGVKDRSKLVVKEDPISQ--EKRLLAKRKNAAIEKASK 137
Query: 134 AVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVXXXXXXXXXXXXDGIEAEGEARAQ 193
++ + EVDRL+ +V E + G K+E+K V D I A+G+ +
Sbjct: 138 SISDISFEVDRLAGQVSAFETVINKGGKVEEKSLVNLIEMLMNQLLRLDAIIADGDVKLM 197
Query: 194 RKAEVRRVQGLVETLDKLKARNANPFSDQNKSVSVTTQWET 234
RK +V+RVQ VE LD LK +N+ + NKSV Q +T
Sbjct: 198 RKMQVQRVQKYVEALDLLKVKNSAKKVEVNKSVRHKPQTQT 238
>AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297
Length = 296
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 43/287 (14%)
Query: 16 EGEWEVRPGGMLVQRRDGDTGPA---VRLRVSHGASFRDVAVPAHSTFGELKGVLTQATG 72
+GE E+RPGGM+VQ+R + +R+RV +G+ ++++ + STFGELK +L+ ATG
Sbjct: 13 DGEMELRPGGMVVQKRTDHSSSVPRGIRVRVKYGSVHHEISINSQSTFGELKKILSGATG 72
Query: 73 VEPERQRLFFRGKEKSDNEFLHTAGVKDGAKXXXXEKPAPANVEQRAEPVIMDESMMKAC 132
V + ++ ++ KE+ FL +GVKD +K E P E+R + + K+
Sbjct: 73 VHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQ--EKRLLELRKIATKEKSS 130
Query: 133 EAVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVXXXXXXXXXXXXDGIEAEGEARA 192
+A+ + +V+RL+ ++ + + G K+E+K+ D I +G+ +
Sbjct: 131 KAISDISFQVERLAGQLSAFDTVIGKGGKVEEKNLENLMEMLMNQLVKLDAISGDGDVKL 190
Query: 193 QRKAE---VR--------RVQGLVETLDKLKARNAN------------------------ 217
++K + +R R+ VE LD LK +N+
Sbjct: 191 KKKMQNLMIRFTNCWKEERLHKYVEALDLLKIKNSRQPQTKPKPQYKEREMLTFYEEASR 250
Query: 218 --PFSDQNKSVSVTTQWETFDNGMGSLNAPPPRVSSTQINTDWEQFD 262
S + V +TT+WETFD+ S P V WE F+
Sbjct: 251 KPTASSSSPPVIITTRWETFDSSSASTATLQP-VRPVHPKFKWELFN 296
>AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164
Length = 163
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 16 EGEWEVRPGGMLVQRRDGDTGP-AVRLRVSHGASFRDVAVPAHSTFGELKGVLTQATGVE 74
E +WE+RPGGMLVQ+R G + +RVS A F D+++ A STFGELK VL+ TG+E
Sbjct: 46 EIKWELRPGGMLVQKRQESIGEDLISIRVSTFAHFHDLSIEATSTFGELKMVLSLLTGLE 105
Query: 75 PERQRLFFRGKEKSDNEFLHTAGVKDGAKXXXXEKPA 111
P++QRL F+GKE+ D+E+LH GV D K E P
Sbjct: 106 PKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDPG 142
>AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166
Length = 165
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 18 EWEVRPGGMLVQRR--DGDTGPAVRLRVSHGASF-RDVAVPAHSTFGELKGVLTQATGVE 74
+WE+RPGGMLVQ+R D +T + LRVS + ++++ A+STFGELK ++ +G+E
Sbjct: 56 KWEMRPGGMLVQKRSEDSNTEDLISLRVSTVSQLSYEISIDANSTFGELKMMIAIVSGIE 115
Query: 75 PERQRLFFRGKEKSDNEFLHTAGVKDGAKXXXXEKPAPANVEQRAEPV 122
+ QRL FRGKE+ D E+LH GV DG K + PA ++ P+
Sbjct: 116 AKEQRLLFRGKEREDREYLHMIGVGDGDKVFLLQDPAFKELKHIHLPI 163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,096,536
Number of extensions: 188055
Number of successful extensions: 452
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 6
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)