BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0830500 Os01g0830500|AK105801
         (394 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11150.1  | chr3:3492986-3494599 REVERSE LENGTH=372             72   4e-13

>AT3G11150.1 | chr3:3492986-3494599 REVERSE LENGTH=372
          Length = 371

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 8/128 (6%)

Query: 271 WTAVGARDGALLVTIGNIAQVWSNGKLKKVRGMARPVSSAPGAGHGAEADRLSVTVLITL 330
           W +V  R  ++LVT+G+IAQVW NG++K+V+   RPV  + G   G     +++T+++TL
Sbjct: 243 WVSVLPRVDSVLVTLGDIAQVWRNGEVKRVK--YRPVLCS-GQKDGP-VKCVTMTLMLTL 298

Query: 331 PLDSVISPLVPVTXXXXXXXXXXXXXX----XXXXXXWRFHSFLLEDLAWRVYNGRLQFK 386
           P+DS++S L  +                           F  F  ++ AWRVY  RL F+
Sbjct: 299 PMDSMVSSLKDMISDGDKEEEYAEEEEEDGGARSDERRAFRPFSFKEYAWRVYQERLFFR 358

Query: 387 DPLVRYRI 394
           DPL RYRI
Sbjct: 359 DPLDRYRI 366



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,475,125
Number of extensions: 159954
Number of successful extensions: 386
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)