BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0826800 Os01g0826800|AK111090
         (171 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30230.1  | chr2:12897156-12897689 FORWARD LENGTH=178          128   2e-30
AT1G06980.1  | chr1:2143248-2143757 REVERSE LENGTH=170            122   9e-29
AT1G29195.1  | chr1:10202673-10203254 REVERSE LENGTH=194          112   1e-25

>AT2G30230.1 | chr2:12897156-12897689 FORWARD LENGTH=178
          Length = 177

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 97/179 (54%), Gaps = 15/179 (8%)

Query: 1   MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGV 60
           MGNSLRCCLACVLPCGALD++RIVHL+GHVDE + P+TAG +L A+PNH L+   S   V
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQGVV 60

Query: 61  GCPTKKLVIVSPDSELKRGRIYFLIPSATLPADXXXXXXXXXXXXXXXXXXXXXXXNGAA 120
               +K++I+SP+SELKRG IYFLIP  ++P                         +   
Sbjct: 61  ----RKILILSPESELKRGSIYFLIPDTSMPEKKKTKKRKELRCRKKPLESGNDINSDHV 116

Query: 121 TAASTAEQ------DNYLRE-LLSEKTAA----XXXXXXXXXXXXVGVWRPQLESIVEE 168
           +     +       + YL + +LSEK ++                V  WRP L+SI E+
Sbjct: 117 STNKDLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSASVSTWRPHLDSITED 175



>AT1G06980.1 | chr1:2143248-2143757 REVERSE LENGTH=170
          Length = 169

 Score =  122 bits (306), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 97/179 (54%), Gaps = 23/179 (12%)

Query: 1   MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGV 60
           MGNSLRCCLACVLPCGALD++RIVHL+G+V+E +  +TAG +L A+PNH L+   S   V
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVV 60

Query: 61  GCPTKKLVIVSPDSELKRGRIYFLIPSATLPADXXXXXXXXXXXXXXXXXXXXXXXNGAA 120
               +K++I+SP+SELKRG IYFLIP ++LP                         N +A
Sbjct: 61  ----RKILILSPESELKRGSIYFLIPDSSLPEK--------KRRRKDTPRRKKNLQNPSA 108

Query: 121 TAASTAEQ---------DNYLRELLSEKTAAXX--XXXXXXXXXXVGVWRPQLESIVEE 168
            AA    +         + YL E++S  +                V  WRP L+SI E+
Sbjct: 109 DAAGREIKGDEECVKLCEKYLEEVVSSASTGKEHRHRRRHSRSASVSTWRPLLDSISED 167



>AT1G29195.1 | chr1:10202673-10203254 REVERSE LENGTH=194
          Length = 193

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 90/193 (46%), Gaps = 31/193 (16%)

Query: 1   MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTL------TTT 54
           M  ++RCC+AC+LPCGALDV+RIVH +GHV+E S  +TA  ++ AHP H L      T+ 
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 55  WSSAGVGCPTKKLVIVSPDSELKRGRIYFLIPSAT-----------LPADXXXXXXXXXX 103
                V   T K+VIV P++EL+RG+IYFL+P+                           
Sbjct: 61  HDERDVISAT-KIVIVPPEAELQRGKIYFLMPATKSDKCAGGGKIRREKSNANAVVKKRS 119

Query: 104 XXXXXXXXXXXXXNGAATAASTAEQ---------DNYLRELLSEKTAAXXXXXXXXXXXX 154
                        NG  +     +          D YL E+LSEK A             
Sbjct: 120 QYRRQHRDGDEKCNGGESNDVKDKNYEKDLLISSDRYLTEILSEKVAT----QKDRRKGR 175

Query: 155 VGVWRPQLESIVE 167
           VGVWRP LESI E
Sbjct: 176 VGVWRPHLESISE 188



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,871,559
Number of extensions: 88882
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 3
Length of query: 171
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 80
Effective length of database: 8,611,713
Effective search space: 688937040
Effective search space used: 688937040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)