BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0823400 Os01g0823400|Os01g0823400
         (370 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38500.1  | chr2:16117610-16119041 REVERSE LENGTH=357           70   2e-12

>AT2G38500.1 | chr2:16117610-16119041 REVERSE LENGTH=357
          Length = 356

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 119/288 (41%), Gaps = 39/288 (13%)

Query: 35  AADELVLAEFLEASLRVPDLALPPKMSSRRSFRYPAPPPTPDVLAGALLSGPDPDAARTA 94
           AA E +L E +E S++VP+L LP   S   S    +    P  +   LL+     +    
Sbjct: 34  AASE-ILTEIIERSIQVPELTLPESHSGGESC--GSRHLIPAEIDFRLLASRREGSVDRL 90

Query: 95  VGAAAESGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRELGRWF---RRRD-----RV 146
           V +A E GAF                             RE GR F     RD      V
Sbjct: 91  VRSAREFGAFRVSYHGISGEELRSLV-------------RESGRVFGVLEGRDTGFHRSV 137

Query: 147 AG--EEFYWFRPATASSDDDRVLDAALPGSTYQVLREKMEIVASKMEDLAQCVMRVLSDN 204
            G  +E  W R      +  R     +    Y+   ++ME VA K+ED+A+ + +++ +N
Sbjct: 138 VGNRDEIVWVRSWKERMEWAR---EYIGPERYRCFSQEMENVADKLEDIARKLGQIMVEN 194

Query: 205 ARNPEDSALSTGAASILCLTLYNCNKLKTHWSEF--GSTNPPNSYALSIHLSGRDQEICL 262
           +R P D  +  G  S+L +  YN   +           T     Y LS+HL  ++ E  +
Sbjct: 195 SRRPNDKKIQRG-ESVLSVYRYNHENVTEQSPPLPKERTEEMLHYTLSLHLPAKNCEFRV 253

Query: 263 RNQSGSTFFSLPAGSMLVTIGKQIQFCYVRTQEWSNGEFKNAVGEILF 310
            +  G   F     ++LVT G+Q+       +EWS GEFK   GEI++
Sbjct: 254 NSGKGPLSFHADPDTILVTFGRQL-------EEWSLGEFKCRQGEIIY 294



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,782,204
Number of extensions: 274989
Number of successful extensions: 921
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,364,969
Effective search space: 2258541630
Effective search space used: 2258541630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)