BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0821800 Os01g0821800|AK119168
(409 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40660.1 | chr2:16966011-16968866 FORWARD LENGTH=390 357 6e-99
AT4G13780.1 | chr4:7993366-7998433 REVERSE LENGTH=798 176 1e-44
AT3G59980.1 | chr3:22154528-22155570 REVERSE LENGTH=274 115 5e-26
>AT2G40660.1 | chr2:16966011-16968866 FORWARD LENGTH=390
Length = 389
Score = 357 bits (916), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 206/403 (51%), Positives = 261/403 (64%), Gaps = 36/403 (8%)
Query: 18 ALCKHLSLDPNXXXXXXXXXXDIATLFSHIVKSSEDEV-------LKWVEFSSNFVGKCG 70
ALCKH SLDP DI TL+S+++K+S EV LKW++F+ F
Sbjct: 12 ALCKHFSLDPEPFVGGAGES-DIKTLYSNVLKASGKEVSAQNNDVLKWLDFAEGFSSDSK 70
Query: 71 EQHALLGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMD 130
+ + L LN +L+ KSVLLGNG PS AD+ VF+ + V L +++ +K PHV+RW++
Sbjct: 71 DWFSALEKLNLELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSDKEKVPHVIRWVN 130
Query: 131 YIQNIVDFGTTVQK--VNLTKSVFDPPSHPKKADKGDTDPSSKKVVSGQKNVGKSDAN-- 186
YIQN + T V L + F+ PK A K +T+ +SKK G K V K D
Sbjct: 131 YIQNKEELSTLFAPIPVKLPEFSFE---VPKPAIKVETNSNSKKAAEGVKPVDKPDVQPQ 187
Query: 187 VDSKKAAPEXXXXXXXXXXXXXXXXXXSGDKKKAQEKSAGKPNEGVADKAPQKTAEKDSE 246
+ +KK PE + K + A + A+K++E
Sbjct: 188 LGTKKTEPE---------------------EPKKNAAKEKDAKKEKKKPAEPEPAKKEAE 226
Query: 247 CNVSILNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVSGLAKFFSPEELVNRHVVL 306
+VS+LNIQVGLIRKAWKHPSADSLLVEEID+G+ V QVVSGLAKF SPE+L NR V L
Sbjct: 227 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEDKVRQVVSGLAKFCSPEDLTNRLVAL 286
Query: 307 ITNVKPGKLRDVMSAGLVLCASNQDHTVVEPLIPPEGAKPGERISFAGFDGKPEDVLNPK 366
ITNVKPGKLRDVMS GLVLCAS++DH+VVEPL+PP GAKPGER+SF+G +GKPEDVLNPK
Sbjct: 287 ITNVKPGKLRDVMSQGLVLCASSEDHSVVEPLLPPAGAKPGERVSFSGIEGKPEDVLNPK 346
Query: 367 KKQLDKITPDLHTDGNGIATYRGVPFTTSAGPCRSSVPNASIK 409
KKQL+KITP L+TD NG+ATY+G+ F TSAGPC SS+P A+IK
Sbjct: 347 KKQLEKITPGLYTDENGVATYKGIQFMTSAGPCTSSIPKATIK 389
>AT4G13780.1 | chr4:7993366-7998433 REVERSE LENGTH=798
Length = 797
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 130/194 (67%), Gaps = 10/194 (5%)
Query: 217 KKKAQEKSAGKPNEGVADKAPQKTAEKDSECNVSILNIQVGLIRKAWKHPSADSLLVEEI 276
K+KA K GKP PQ A D E ++ L+I+VG I KA KHP AD+L VEEI
Sbjct: 613 KQKASSKGGGKPK-------PQPAA--DREITMARLDIRVGKIVKAEKHPKADALYVEEI 663
Query: 277 DLGDGNVHQVVSGLAKFFSPEELVNRHVVLITNVKPGKLRDVMSAGLVLCASNQDHTVVE 336
D+G G + VVSGL K+ EE+ NR V ++ N+KP K+RD++S +VL AS+ D + VE
Sbjct: 664 DVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVE 723
Query: 337 PLIPPEGAKPGERISFAGFDGKPEDVLNPKKKQLDKITPDLHTDGNGIATYRGVPFTTSA 396
+ PP+ A GER++F GF+G+P+DVLNPKKK + + DL+T N +A Y+ VPFTTSA
Sbjct: 724 LVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSA 783
Query: 397 GPCR-SSVPNASIK 409
G C+ SS+ N +I+
Sbjct: 784 GVCKVSSISNGTIR 797
>AT3G59980.1 | chr3:22154528-22155570 REVERSE LENGTH=274
Length = 273
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 13/188 (6%)
Query: 233 ADKAPQKTAEKDSECNV----SILNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVS 288
AD++ +K+ + E NV ++L+I+VG I KAW+H ADSL VEE+D+G+ + S
Sbjct: 86 ADESEKKSESQKEEENVKETANLLDIKVGRIVKAWQHEEADSLYVEEVDIGEAEPRIICS 145
Query: 289 GLAKFFSPEELVNRHVVLITNVKPGKLRDVMSAGLVLCASNQDHTVVEPLIPPEGAKPGE 348
GL K+ + L VV++ N+KP +R V S G++L AS+ H VE L+PPEG+ PG+
Sbjct: 146 GLVKYVPLDLLQGASVVVLANLKPRNMRGVKSCGMLLAASDAAHENVELLVPPEGSVPGD 205
Query: 349 RISFAGFDGKPEDVLNP-------KKKQLDKITPDLHTDGNGIATYRGVPFTTSAGPCRS 401
R+ F G + E + P KKK + + P L TD +G++ + TS+G S
Sbjct: 206 RVWF-GNEEDLEQLPEPAPPNKVQKKKMWELVQPLLKTDASGVSMLKEHLMRTSSGLVTS 264
Query: 402 -SVPNASI 408
S+ NA+I
Sbjct: 265 KSLRNANI 272
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,613,673
Number of extensions: 368513
Number of successful extensions: 878
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 874
Number of HSP's successfully gapped: 3
Length of query: 409
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,337,553
Effective search space: 2567966324
Effective search space used: 2567966324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)