BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0819500 Os01g0819500|AK058360
(47 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64230.4 | chr1:23833792-23835220 FORWARD LENGTH=191 97 1e-21
AT3G08690.1 | chr3:2641487-2642489 FORWARD LENGTH=149 97 2e-21
AT5G53300.1 | chr5:21632802-21633989 REVERSE LENGTH=149 95 6e-21
AT5G41700.4 | chr5:16676072-16677223 FORWARD LENGTH=150 95 6e-21
AT4G27960.2 | chr4:13916065-13917293 REVERSE LENGTH=179 94 1e-20
AT5G56150.1 | chr5:22729756-22730964 FORWARD LENGTH=149 93 3e-20
AT3G08700.1 | chr3:2643482-2644545 FORWARD LENGTH=150 88 1e-18
AT2G16740.1 | chr2:7267880-7268737 FORWARD LENGTH=149 87 2e-18
AT1G16890.3 | chr1:5776550-5778327 REVERSE LENGTH=163 50 3e-07
AT1G78870.1 | chr1:29650589-29652203 FORWARD LENGTH=155 49 4e-07
AT2G32790.1 | chr2:13905649-13906271 REVERSE LENGTH=178 49 5e-07
AT3G24515.1 | chr3:8934569-8936207 REVERSE LENGTH=410 45 1e-05
>AT1G64230.4 | chr1:23833792-23835220 FORWARD LENGTH=191
Length = 190
Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TARSWTQKYAMG
Sbjct: 144 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 190
>AT3G08690.1 | chr3:2641487-2642489 FORWARD LENGTH=149
Length = 148
Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TARSWTQKYAMG
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148
>AT5G53300.1 | chr5:21632802-21633989 REVERSE LENGTH=149
Length = 148
Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 46/47 (97%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TARSWTQKYAMG
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148
>AT5G41700.4 | chr5:16676072-16677223 FORWARD LENGTH=150
Length = 149
Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 45/47 (95%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE TAR+WTQKYAMG
Sbjct: 103 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 149
>AT4G27960.2 | chr4:13916065-13917293 REVERSE LENGTH=179
Length = 178
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/47 (91%), Positives = 46/47 (97%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TAR+WTQKYAMG
Sbjct: 132 VLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 178
>AT5G56150.1 | chr5:22729756-22730964 FORWARD LENGTH=149
Length = 148
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/47 (91%), Positives = 46/47 (97%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAH+YKTDR KYE+TA+SWTQKYAMG
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148
>AT3G08700.1 | chr3:2643482-2644545 FORWARD LENGTH=150
Length = 149
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/47 (82%), Positives = 44/47 (93%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNP+DPLVPEIAH+YK D+ KYE+TA+ WTQKYAMG
Sbjct: 103 VLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149
>AT2G16740.1 | chr2:7267880-7268737 FORWARD LENGTH=149
Length = 148
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 43/46 (93%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAM 46
VLLSICSLLTDPNPDDPLVPEIAH+YKTD+ KYE ARSWTQKYA+
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147
>AT1G16890.3 | chr1:5776550-5778327 REVERSE LENGTH=163
Length = 162
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSI +LL+ PNPDDPL IA +K++ + TA+ WT+ YA G
Sbjct: 115 VLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 161
>AT1G78870.1 | chr1:29650589-29652203 FORWARD LENGTH=155
Length = 154
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSI +LL+ PNPDDPL IA +K++ + TA+ WT+ YA G
Sbjct: 107 VLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 153
>AT2G32790.1 | chr2:13905649-13906271 REVERSE LENGTH=178
Length = 177
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 1 VLLSICSLLTDPNPDDPLV--PEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICS+L+ NP +PL+ A +Y+ DR YE AR WT KYA G
Sbjct: 131 VLLSICSILS--NPVEPLLVSNHAARLYQKDRKAYEKVAREWTLKYAKG 177
>AT3G24515.1 | chr3:8934569-8936207 REVERSE LENGTH=410
Length = 409
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYA 45
VL S+ LL++PNPDD L+ E++ YK +R ++ AR T+KYA
Sbjct: 120 VLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,235,412
Number of extensions: 34154
Number of successful extensions: 108
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 13
Length of query: 47
Length of database: 11,106,569
Length adjustment: 21
Effective length of query: 26
Effective length of database: 10,530,833
Effective search space: 273801658
Effective search space used: 273801658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)