BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0818300 Os01g0818300|AK063274
(283 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287 305 2e-83
AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284 296 8e-81
AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316 245 2e-65
AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309 238 2e-63
AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299 233 8e-62
AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805 94 1e-19
>AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287
Length = 286
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/284 (56%), Positives = 199/284 (70%), Gaps = 8/284 (2%)
Query: 1 MEALTNAEKCFSPARAMXXXXXXXXXXXXGAAGQYLAELLQEQQKIGPFVQVLPICGRLL 60
M L N FSPARA + QYL ELL E QK+ PF+QVLPIC RLL
Sbjct: 1 MSGLYNNSSYFSPARAASPQIRSTPEID---SSQYLTELLAEHQKLTPFMQVLPICSRLL 57
Query: 61 NQEIMRMSAIVSHLGVREHDRLPIASPNQMHPLPQVPNFCGNGFNPWTGTLPEK-NGFPR 119
NQE+ R+S ++S+ G + DRL SP+ M + N G W G E+ +G P
Sbjct: 58 NQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPG 117
Query: 120 GTMGWEGAAHDPS-YIVKKIVRLEVPTDAYPHFNFIGRLLGPRGNSLKRVEASTGCRVFI 178
TM W+GA PS Y VK+I+RLE+P D YP+FNF+GRLLGPRGNSLKRVEA+TGCRVFI
Sbjct: 118 MTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFI 177
Query: 179 RGKGSIKDPIKEEQLKGRPGYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPVE 238
RGKGSIKDP KE++L+GRPGYEHL++ HILIEA+LPA +++ RL QAQEI+E+LLKPV+
Sbjct: 178 RGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVD 237
Query: 239 ESQDFLKRQQLRELAVLNS-TYREDS--PHQNGSASPFSNGSTK 279
ESQDF+KRQQLRELA+LNS RE+S P GS SPF++ +
Sbjct: 238 ESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSGKR 281
>AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284
Length = 283
Score = 296 bits (758), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 161/287 (56%), Positives = 204/287 (71%), Gaps = 18/287 (6%)
Query: 1 MEALTNAEKCFSPARAMXXXXXXXXXXXXGAAGQYLAELLQEQQKIGPFVQVLPICGRLL 60
M L N FSP+RA QY+++LL E QK+GPF+QVLPIC RLL
Sbjct: 1 MSGLYNYNN-FSPSRA---ASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLL 56
Query: 61 NQEIMRMSAIVSHLGVREHDRL------PIASPNQMHPLPQVPNFCGNGFNPWTGTLPEK 114
NQEI R++ ++ + G + DRL P+ASPN M N G G W G PE+
Sbjct: 57 NQEIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMS------NVSGGGLGGWNGLPPER 110
Query: 115 NGFPRG-TMGWEGAAHDPS-YIVKKIVRLEVPTDAYPHFNFIGRLLGPRGNSLKRVEAST 172
G P G M W+GA PS Y VK+I+RL++P D YP+FNF+GRLLGPRGNSLKRVEA+T
Sbjct: 111 IGGPHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATT 170
Query: 173 GCRVFIRGKGSIKDPIKEEQLKGRPGYEHLSDPTHILIEAELPADVIDTRLAQAQEILED 232
GCRV+IRGKGSIKDP KEE+LKG+PGYEHL++ HILIEA+LP D++D +L QAQEI+E+
Sbjct: 171 GCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEE 230
Query: 233 LLKPVEESQDFLKRQQLRELAVLNSTYREDSPHQNGSASPFSNGSTK 279
L+KPV+ESQD++KRQQLRELA+LNS RE+SP +GS SPF++ + K
Sbjct: 231 LVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMK 277
>AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316
Length = 315
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/251 (49%), Positives = 166/251 (66%), Gaps = 5/251 (1%)
Query: 34 QYLAELLQEQQKIGPFVQVLPICGRLLNQEIMRMSAIVSHLGVREHDRLPIASPNQMHPL 93
+YL+ELL E+ K+ PF+ VLP RLLNQEI+R++ ++ + V L SP +
Sbjct: 64 KYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDHPSPLASGGI 123
Query: 94 PQVPNFCGNGFNPWTGTLPEKNGFPR--GTMGWEGAAHDPSYIVKKIVRLEVPTDAYPHF 151
Q NG W P + P G I K+ +R+++P D YP+F
Sbjct: 124 FQNARADMNG---WASQFPSERSVPSSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNF 180
Query: 152 NFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDPIKEEQLKGRPGYEHLSDPTHILIE 211
NF+GRLLGPRGNSLKRVEAST CRV IRG+GSIKDPIKEE ++G+PGYEHL++P HIL+E
Sbjct: 181 NFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVE 240
Query: 212 AELPADVIDTRLAQAQEILEDLLKPVEESQDFLKRQQLRELAVLNSTYREDSPHQNGSAS 271
AELP +++D RL QA+EIL+DLL P+EE+ D K+QQLRELA+LN T RE+ +GS S
Sbjct: 241 AELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSVS 300
Query: 272 PFSNGSTKLGK 282
P+++ K K
Sbjct: 301 PYNSLGMKRAK 311
>AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309
Length = 308
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/251 (49%), Positives = 170/251 (67%), Gaps = 7/251 (2%)
Query: 34 QYLAELLQEQQKIGPFVQVLPICGRLLNQEIMRMSAIVSHLGVREHDRLPIASPNQMHPL 93
+YL+ELL E+ K+ PF+ VLP RL+NQEI+R++ ++ + R SP +
Sbjct: 60 KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLEN--ALSQSRFDHPSPLASGGI 117
Query: 94 PQVPNFCGNGFNPWTGTLP-EKNGFPRGTMGWEGAAHDPS-YIVKKIVRLEVPTDAYPHF 151
Q NG W P E++ W + S IVK+ +R+++P D YP++
Sbjct: 118 FQNSRADMNG---WASQFPSERSVSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPNY 174
Query: 152 NFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDPIKEEQLKGRPGYEHLSDPTHILIE 211
NF+GRLLGPRGNSLKRVEAST CRV IRG+GSIKDPIKE+ ++G+PGYEHL++P HIL+E
Sbjct: 175 NFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVE 234
Query: 212 AELPADVIDTRLAQAQEILEDLLKPVEESQDFLKRQQLRELAVLNSTYREDSPHQNGSAS 271
AELP +++D RL QA+EIL+DLL PVEE+ DF K+QQLRELA+LN + RE+ +GS S
Sbjct: 235 AELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREEGSPMSGSIS 294
Query: 272 PFSNGSTKLGK 282
P+++ K K
Sbjct: 295 PYNSLGMKRAK 305
>AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299
Length = 298
Score = 233 bits (594), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 169/263 (64%), Gaps = 28/263 (10%)
Query: 34 QYLAELLQEQQKIGPFVQVLPICGRLLNQEIMRMSAIVSHLGVREHDRLPIASPNQMHPL 93
+YL ELLQE+QK+GPF+QV+P C RLLN EI R+S+ + DR SP +
Sbjct: 44 RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSSFP------DLDRYEHGSPFRSLGQ 97
Query: 94 PQVPNFCGNGFNPWTGTLPEKNGF-----------PRGTMGWEGAAHDPSYIVKKIVRLE 142
P G W+ E+N P G +G G + P IVKK++RL+
Sbjct: 98 PTNGKLDLEG---WSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPP--IVKKVIRLD 152
Query: 143 VPTDAYPHFNFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDPIKEEQLKGRPGYEHL 202
VP D YP +NF+GR+LGPRGNSLKRVE +T CRVFIRG+GS+KD +KEE+LKG+PGYEHL
Sbjct: 153 VPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHL 212
Query: 203 SDPTHILIEAELPADVIDTRLAQAQEILEDLLKPVEESQDFLKRQQLRELAVLNSTYRED 262
+P H+LIEAELP D+I++RL A LE LLKP++ES D KR+QL+ELA LN T RE+
Sbjct: 213 CEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREE 272
Query: 263 SPHQ------NGSASPFSNGSTK 279
SP + S SPF++ K
Sbjct: 273 SPSPSLSPCLSPSMSPFNSKRAK 295
>AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805
Length = 804
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 6/123 (4%)
Query: 140 RLEVPTDAYPHFNFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDPIKEEQLKGRPGY 199
+L +P +P +NFIG ++GPRGN+ KR+E TG ++ IRGKGS+K+ + +Q K
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE-GRHQQKKDLKYD 302
Query: 200 EHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPVEESQDFLKRQQLRELAVLNSTY 259
++ H+L+EAE L A ++E LL+PV+E + KRQQLRELA LN T
Sbjct: 303 PSENEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGTI 357
Query: 260 RED 262
R++
Sbjct: 358 RDE 360
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,107,322
Number of extensions: 262818
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 6
Length of query: 283
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 186
Effective length of database: 8,447,217
Effective search space: 1571182362
Effective search space used: 1571182362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)