BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0811200 Os01g0811200|J090008D18
         (128 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01575.1  | chr4:682040-682474 REVERSE LENGTH=145               83   4e-17
AT3G61980.1  | chr3:22956344-22956697 REVERSE LENGTH=118           75   7e-15

>AT4G01575.1 | chr4:682040-682474 REVERSE LENGTH=145
          Length = 144

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 48  DGGSEAQLCPVRCFRPDPVCGADGVTYWCGCPEXXXXXXXXXXXXYCEVGAG-SAPVSGQ 106
           +G ++   CPV+CFRPDPVCG D VTYWCGC +             C+VG G    V GQ
Sbjct: 63  EGIAKPASCPVQCFRPDPVCGEDSVTYWCGCADALCHGVRVVKQGACDVGNGVGLSVPGQ 122

Query: 107 ALLLVHIVWLFVLGAAVLLGFL 128
           ALLL+HIVW+ +LG ++L G  
Sbjct: 123 ALLLIHIVWMMLLGFSILFGLF 144



>AT3G61980.1 | chr3:22956344-22956697 REVERSE LENGTH=118
          Length = 117

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 56  CPVRCFRPDPVCGADGVTYWCGCPEXXXXXXXXXXXXYCEVG-AGSAPVSGQALLLVHIV 114
           C + CFR DPVCG DGVTYWCGCP+             C+ G AGSA V GQALLL+HIV
Sbjct: 44  CTINCFRADPVCGTDGVTYWCGCPDAACHGARVVKKGACDTGNAGSASVPGQALLLIHIV 103

Query: 115 W 115
           W
Sbjct: 104 W 104



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.142    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,136,311
Number of extensions: 61250
Number of successful extensions: 69
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 41
Effective length of database: 8,721,377
Effective search space: 357576457
Effective search space used: 357576457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)