BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0807900 Os01g0807900|AK072454
         (539 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12200.1  | chr5:3941700-3944727 REVERSE LENGTH=532            808   0.0  
AT4G04955.1  | chr4:2522301-2525259 REVERSE LENGTH=507             92   6e-19

>AT5G12200.1 | chr5:3941700-3944727 REVERSE LENGTH=532
          Length = 531

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/479 (79%), Positives = 432/479 (90%), Gaps = 1/479 (0%)

Query: 61  TVVNAHRVEEADVYVEDGVIVAVRPNIPVGDDHVKVIDATGKYVMPGGIDPHTHLEMEFM 120
           TVVNAH  E ADVYVE+G+IVAV+PNI VGD+ V V+DATGK+VMPGGIDPHTHL MEFM
Sbjct: 53  TVVNAHHQELADVYVENGIIVAVQPNIKVGDE-VTVLDATGKFVMPGGIDPHTHLAMEFM 111

Query: 121 GTVTIDDFFSGHAAALAGGTTMHIDFVIPVNGNLTAGLESYKQKAEKSAMDYGFHMAITK 180
           GT TIDDFFSG AAALAGGTTMHIDFVIPVNGNL AG E+Y+ K+ +S MDYGFHMAITK
Sbjct: 112 GTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLVAGFEAYENKSRESCMDYGFHMAITK 171

Query: 181 WNDDVSREMETMVKEHGINSFKFFMAYKGSLMVTDDLLLQGLQKCKSLGALAMVHAENGD 240
           W++ VSR+ME +VKE GINSFKFF+AYKGSLMVTDDLLL+GL++CKSLGALAMVHAENGD
Sbjct: 172 WDEGVSRDMEMLVKEKGINSFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGD 231

Query: 241 AVAEGQQRMIDLGITGPEGHALSRPPVLEGEATARAIRLAKFVNTPLYVVHVMSIDAMDE 300
           AV EGQ+RMI+LGITGPEGHALSRPPVLEGEATARAIRLA+F+NTPLYVVHVMS+DAMDE
Sbjct: 232 AVFEGQKRMIELGITGPEGHALSRPPVLEGEATARAIRLARFINTPLYVVHVMSVDAMDE 291

Query: 301 IAKAKREGQRVIGEPVVSGLVLDDSWLWDPDFMIASKYVMSPPIREAGHNKALQVALSSG 360
           IAKA++ GQ+VIGEPVVSGL+LDD WLWDPDF IASKYVMSPPIR  GH KALQ ALS+G
Sbjct: 292 IAKARKSGQKVIGEPVVSGLILDDHWLWDPDFTIASKYVMSPPIRPVGHGKALQDALSTG 351

Query: 361 ILQLVGTDHCTFNSTQKAFGSDDFRKIPNGVNGIEERMHIIWDSMVETGRISVSDYVRVT 420
           ILQLVGTDHCTFNSTQKA G DDFR+IPNGVNG+EERMH+IWD+MVE+G++S +DYVR+T
Sbjct: 352 ILQLVGTDHCTFNSTQKALGLDDFRRIPNGVNGLEERMHLIWDTMVESGQLSATDYVRIT 411

Query: 421 STECAKIFNIYPRKGAILEGSDADIIILNPERSFVMGAHTHHSRSNTNVYEGRKGKGMVE 480
           STECA+IFNIYPRKGAIL GSDADIIILNP  S+ + + +HHSRS+TNVYEGR+GKG VE
Sbjct: 412 STECARIFNIYPRKGAILAGSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVE 471

Query: 481 VTISRGRVVWEDGILNVVPGSGRYVRTPPYSYLFDGIEKSDAAYRASLRAPVKRGKAAA 539
           VTI+ GR+VWE+  L VVP SG+Y+  PP+SYLFDGIEKSDA Y +SLRAPVKR +  A
Sbjct: 472 VTIAGGRIVWENEELKVVPRSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPVKRVRTEA 530



>AT4G04955.1 | chr4:2522301-2525259 REVERSE LENGTH=507
          Length = 506

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 195/459 (42%), Gaps = 46/459 (10%)

Query: 62  VVNAHRVEEADVYVEDGVIVAVRPNIPVGDDH------VKVIDATGKYVMPGGIDPHTHL 115
           +V  + +    V V+ G+IV+V   +   D H      VKVID     +MPG ID H HL
Sbjct: 52  IVTPNGLISGSVEVKGGIIVSVVKEV---DWHKSQRSRVKVIDYGEAVLMPGLIDVHVHL 108

Query: 116 EMEFMGTVTIDDFFSGHAAALAGGTTMHIDFVIPVNG-NLTAGLESYKQKAEKSA----M 170
           +    G    + F SG  AA AGG T  +D  +P+N    T   E+ K K E +     +
Sbjct: 109 DDP--GRSEWEGFPSGTKAAAAGGITTLVD--MPLNSFPSTVSPETLKLKIEAAKNRIHV 164

Query: 171 DYGFHMAITKWNDDVSREMETMVKEHGINSFKFFMAYKG---SLMVTDDLLLQGLQKCKS 227
           D GF   +   N   S  +E+++ + G+   K FM   G     M     + +GL     
Sbjct: 165 DVGFWGGLVPDNALNSSALESLL-DAGVLGLKSFMCPSGINDFPMTNITHIKEGLSVLAK 223

Query: 228 LGALAMVHAENGDAVAEGQQRMIDLGITGPEGHAL---SRPPVLEGEATARAIRLAKFVN 284
                +VHAE      E    + D     P  +     +RP   E  A    + + +   
Sbjct: 224 YKRPLLVHAE-----IERDLEIEDGSENDPRSYLTYLKTRPTSWEEGAIRNLLSVTENTR 278

Query: 285 -------TPLYVVHVM-SIDAMDEIAKAKREGQRVIGEPVVSGLVLDDSWLWDPDFMIAS 336
                    L++VH+  +  ++D I +AK +G  V  E     L      + + D    +
Sbjct: 279 IGGSAEGAHLHIVHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPEGD----T 334

Query: 337 KYVMSPPIREAGHNKALQVALSSGILQLVGTDHCTFNSTQKAFGSDDFRKIPNGVNGIEE 396
           ++  SPPIR+A + + L  AL  G + ++ +DH       K     +F K   G++ ++ 
Sbjct: 335 RFKCSPPIRDAANREKLWEALMEGDIDMLSSDHSPTKPELKLMSDGNFLKAWGGISSLQF 394

Query: 397 RMHIIWDSMVETGRISVSDYVRVTSTECAKIFNIYPRKGAILEGSDADIIILNPERSFVM 456
            + I W    + G +++       S   +K+  ++  KGA+  G  AD+++  PE  F +
Sbjct: 395 VLPITWSYGKKYG-VTLEQVTSWWSDRPSKLAGLH-SKGAVTVGKHADLVVWEPEAEFDV 452

Query: 457 GAH--THHSRSNTNVYEGRKGKGMVEVTISRGRVVWEDG 493
                 H    + + Y GR+  G V  T  RG +V+ +G
Sbjct: 453 DEDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEG 491



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,745,009
Number of extensions: 444781
Number of successful extensions: 936
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 932
Number of HSP's successfully gapped: 2
Length of query: 539
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 436
Effective length of database: 8,282,721
Effective search space: 3611266356
Effective search space used: 3611266356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)