BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0806000 Os01g0806000|J053025L01
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56740.1  | chr3:21015631-21017883 FORWARD LENGTH=294          117   3e-27
AT2G41160.1  | chr2:17156314-17158687 REVERSE LENGTH=288          110   5e-25

>AT3G56740.1 | chr3:21015631-21017883 FORWARD LENGTH=294
          Length = 293

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 67/95 (70%)

Query: 31  MSGGLPGFHNAPXXXXXXXXXXXXXXXXGFRGRFLDLGLSYENVYGKLRIWKLITSLFAF 90
           M+GG  GFHNAP                G +GR   LGLSY++++ K RIWKLI S FAF
Sbjct: 1   MNGGPSGFHNAPVTKAFVITSALFTVFFGIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAF 60

Query: 91  SSTPELIFGAALLYYFRVFERQIGSNKYSVFIVFS 125
           SSTPEL+FG  LLYYFRVFERQIGSNKYSVFI+FS
Sbjct: 61  SSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFS 95



>AT2G41160.1 | chr2:17156314-17158687 REVERSE LENGTH=288
          Length = 287

 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 73/111 (65%)

Query: 31  MSGGLPGFHNAPXXXXXXXXXXXXXXXXGFRGRFLDLGLSYENVYGKLRIWKLITSLFAF 90
           M+GG  GF+NAP                G RG    LGLSY++++ K RIWKLI S FAF
Sbjct: 1   MNGGPSGFNNAPVTKAFVIATALFTVFFGIRGGSSKLGLSYQDIFEKFRIWKLIISAFAF 60

Query: 91  SSTPELIFGAALLYYFRVFERQIGSNKYSVFIVFSTAVSVLLQILSLAYLK 141
           SST +L+ G  LLY+FRVFERQIGSNKYSVFI FS  VS++L+ + L+  K
Sbjct: 61  SSTTQLLSGLYLLYFFRVFERQIGSNKYSVFIFFSGFVSLILETILLSLTK 111



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,378,030
Number of extensions: 116367
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 108 (46.2 bits)