BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0801600 Os01g0801600|AK073318
(552 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41540.1 | chr2:17326801-17328654 FORWARD LENGTH=463 746 0.0
AT3G07690.1 | chr3:2457232-2459378 FORWARD LENGTH=467 739 0.0
AT5G40610.1 | chr5:16265071-16267258 REVERSE LENGTH=401 73 4e-13
AT2G40690.1 | chr2:16974107-16976241 FORWARD LENGTH=421 56 5e-08
>AT2G41540.1 | chr2:17326801-17328654 FORWARD LENGTH=463
Length = 462
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/441 (81%), Positives = 398/441 (90%)
Query: 106 TVEEKLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGR 165
+EEKLDE RRLLGK++ DPLRIV VGAGAWGSVF AL+Q++YG RDK Q+RIWRR GR
Sbjct: 22 NLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFRDKFQIRIWRRAGR 81
Query: 166 AVDRATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDT 225
AVDR TAEHLFEVIN+RED+LRRLIRRCAYLKYVE RLGDRTLYADEIL+DGFCLNM+DT
Sbjct: 82 AVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMVDT 141
Query: 226 PLCPLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEAS 285
PLCPLKVVTNLQEAVWDADIV+NGLPST+TREVF EI +YWKERIT PII+SL+KGIE +
Sbjct: 142 PLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITVPIIISLSKGIETA 201
Query: 286 LDPLPRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKF 345
L+P+P IITPT+MI ATGVP++N+LYLGGPNIA+EIYNKEYANARICGA KWRKPLAKF
Sbjct: 202 LEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARICGAAKWRKPLAKF 261
Query: 346 LRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYIT 405
LRQPHFIVWDNSDL+THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFA CTSEMI+IT
Sbjct: 262 LRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFIT 321
Query: 406 HLLEEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVN 465
HLL EEPEKLAGPLLADTYVTLLKGRNAWYGQ LAKGE+ +MGDSI GKG IQGVSAV
Sbjct: 322 HLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEINRDMGDSISGKGMIQGVSAVG 381
Query: 466 AFYELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDETMYDP 525
AFY+LLSQ SLS++ E + VAPVE CPILK LYKILI RE +ILQA+RDET+ DP
Sbjct: 382 AFYQLLSQSSLSILPSEEKKPVAPVESCPILKTLYKILITREQSTQAILQALRDETLNDP 441
Query: 526 RERIEMAQGHSLYRPSLLGQP 546
R+RIE+AQ H+ YRPSLLGQP
Sbjct: 442 RDRIEIAQSHAFYRPSLLGQP 462
>AT3G07690.1 | chr3:2457232-2459378 FORWARD LENGTH=467
Length = 466
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/449 (77%), Positives = 393/449 (87%), Gaps = 10/449 (2%)
Query: 107 VEEKLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGRA 166
VEE+LDE+RR++GKAD DPLRIVGVGAGAWGSVF A++Q+ YG R KV VRIWRR GRA
Sbjct: 16 VEERLDEIRRVMGKADDDPLRIVGVGAGAWGSVFIAMLQENYGKFRGKVSVRIWRRGGRA 75
Query: 167 VDRATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDTP 226
+D+ATAEHLFEVIN+RE++LRRLIRRCAYLKYVE RLGDR LYADEIL+DGFCLNMI+TP
Sbjct: 76 IDKATAEHLFEVINSREELLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIETP 135
Query: 227 LCPLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASL 286
LCPLKVVTNLQEAVWDADIVINGLPST+T +VF EI +YWKER+ AP+I+SLAKG+EA
Sbjct: 136 LCPLKVVTNLQEAVWDADIVINGLPSTETFQVFNEISKYWKERVNAPVIISLAKGVEAEF 195
Query: 287 DPLPRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFL 346
+P PRI+TPTQMI ATG+PLENILYLGGPNIASE+YNKEYANARICG++KWRKPL KFL
Sbjct: 196 EPHPRIVTPTQMIHRATGIPLENILYLGGPNIASEVYNKEYANARICGSEKWRKPLGKFL 255
Query: 347 RQPHFIVWDNSDLITHEVMGGLKNVYAIGA----------GMVAALTNESATSKSVYFAL 396
RQ HFIVWDNSDLITHEVMGGLKNVYAIGA GMVA LT ESATSKSVYFA
Sbjct: 256 RQSHFIVWDNSDLITHEVMGGLKNVYAIGAVFVLAFLYSTGMVATLTKESATSKSVYFAH 315
Query: 397 CTSEMIYITHLLEEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKG 456
CTSEMI+ITHLL +EPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGEL+LEMGDSIKGKG
Sbjct: 316 CTSEMIFITHLLAKEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKG 375
Query: 457 TIQGVSAVNAFYELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQA 516
IQGVSAV AF+ELL+Q SLS+ HPE + V P E+CPILK LY+ILI RE ++IL+A
Sbjct: 376 MIQGVSAVKAFFELLNQSSLSLQHPEEGKPVTPAELCPILKMLYRILITREFSCEAILEA 435
Query: 517 IRDETMYDPRERIEMAQGHSLYRPSLLGQ 545
+RDETM DPRE IE+A H ++P LLGQ
Sbjct: 436 LRDETMNDPRELIEIAHSHLFFQPWLLGQ 464
>AT5G40610.1 | chr5:16265071-16267258 REVERSE LENGTH=401
Length = 400
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 173/416 (41%), Gaps = 88/416 (21%)
Query: 119 GKADGDPLRIVGVGAGAWGSVFCALM-QDAYGHLRDKVQVRIWRRPGRAVDRATAEHLFE 177
G D ++ VG+G WGSV L+ +A +VR+W +FE
Sbjct: 48 GCNDDSKSKVTVVGSGNWGSVAAKLIASNALKLPSFHDEVRMW--------------VFE 93
Query: 178 VINAREDVLRRLIRRC-AYLKYVEGRLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNL 236
+ + L +I + +KY+ G R + AD +L
Sbjct: 94 EVLPNGEKLNDVINKTNENVKYLPGIKLGRNVVAD----------------------PDL 131
Query: 237 QEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPI-ILSLAKGIEASLDPLPRIITP 295
+ AV DA++++ P + I + +IT + +SL KG+E + P +I+
Sbjct: 132 ENAVKDANMLVFVTP----HQFMDGICKKLDGKITGDVEAISLVKGMEVKKEG-PCMIS- 185
Query: 296 TQMISNATGVPLENILYLGGPNIASEIYNKEYANARICG------ADKWRKPLAKFLRQP 349
+IS G+ N L G NIA+EI ++++ A + AD W + P
Sbjct: 186 -SLISKQLGI---NCCVLMGANIANEIAVEKFSEATVGYRGSREIADTW----VQLFSTP 237
Query: 350 HFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHLL- 408
+F+V D+ E+ G LKNV AI AG V L + T K+ + EM ++ LL
Sbjct: 238 YFMVTPVHDVEGVELCGTLKNVVAIAAGFVDGLEMGNNT-KAAIMRIGLREMKALSKLLF 296
Query: 409 --EEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKG-------ELTLEMGDSIKGKGTIQ 459
++ +AD T L GRN + AK EL EM ++G+ +Q
Sbjct: 297 PSVKDSTFFESCGVADVITTCLGGRNRRVAEAFAKSRGKRSFDELEAEM---LQGQ-KLQ 352
Query: 460 GVSAVNAFYELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQ 515
GVS YE+L + +EM P+ +++I R L P++I+Q
Sbjct: 353 GVSTAREVYEVL-------------KHCGWLEMFPLFSTVHQICTGR-LQPEAIVQ 394
>AT2G40690.1 | chr2:16974107-16976241 FORWARD LENGTH=421
Length = 420
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 122/288 (42%), Gaps = 34/288 (11%)
Query: 234 TNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRII 293
T+ + A+ DAD ++ +P + I Y + P I SL+KG+E L +
Sbjct: 151 TDAKAALLDADYCLHAVPVQFSSSFLEGIADYVDPGL--PFI-SLSKGLE-----LNTLR 202
Query: 294 TPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADK-WRKPLAKFLRQPHFI 352
+Q+I A P + + L GP+ A E+ N + DK + + L +
Sbjct: 203 MMSQIIPIALKNPRQPFVALSGPSFALELMNNLPTAMVVASKDKKLANAVQQLLASSYLR 262
Query: 353 VWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHLLEEEP 412
+ +SD+ E+ G LKNV AI AG+V + N S + + SE+ ++ + +P
Sbjct: 263 INTSSDVTGVEIAGALKNVLAIAAGIVDGM-NLGNNSMAALVSQGCSEIRWLATKMGAKP 321
Query: 413 EKL-----AGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVNAF 467
+ G ++ +V L RN G +L GE ++ S+ +GV+ A
Sbjct: 322 TTITGLSGTGDIMLTCFVNL--SRNRTVGVRLGSGETLDDILTSMNQVA--EGVATAGAV 377
Query: 468 YELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQ 515
L + ++ + P+L A+ KI+ P ++L+
Sbjct: 378 IALAQKYNVKL---------------PVLTAVAKIIDNELTPTKAVLE 410
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,941,978
Number of extensions: 429377
Number of successful extensions: 962
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 4
Length of query: 552
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,255,305
Effective search space: 3698376640
Effective search space used: 3698376640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)