BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0800300 Os01g0800300|AK100951
(329 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44860.1 | chr5:18110688-18111653 REVERSE LENGTH=322 202 2e-52
AT4G19950.1 | chr4:10809977-10810942 FORWARD LENGTH=322 199 2e-51
AT1G31130.1 | chr1:11114963-11115928 REVERSE LENGTH=322 192 2e-49
>AT5G44860.1 | chr5:18110688-18111653 REVERSE LENGTH=322
Length = 321
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 153/328 (46%), Gaps = 8/328 (2%)
Query: 1 MELATHDLAALGAADLVRVSASIPRAAPRTFALLTAGLVFPLSAAVLVHSLFTHPIILRL 60
M+LA +L L ++R S +IP+ +P+TF L+T L+FPLS A+L HSLFT PI+ +L
Sbjct: 1 MDLAAEELQFLNIQGILRESTTIPKFSPKTFYLITLTLIFPLSFAILAHSLFTQPILAQL 60
Query: 61 QGANGDYSSSDSAQWLKLFAYQXXXXXXXXXXXXXXXXXXXXXVASLYAAKXXXXXXXXX 120
S + +W L YQ VASLY K
Sbjct: 61 DATPPSDQSKTNHEWTLLLIYQFIYVIFLFAFSLLSTAAVVFTVASLYTGKPVSFSSTMS 120
Query: 121 XXXXXXXXXXXTFLWVSLLMLAYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
TFLWVSL+ML Y+
Sbjct: 121 AIPLVLKRLFITFLWVSLMMLVYN---SVFLLFLVVLIVAIDLQSVILAVFSMVVIFVLF 177
Query: 181 XXIHVYISALWHLASVISVLEPLCGLAAMTKSKQLLQGRTRTAGVLVVSYFAACGVTAVL 240
+HVY++A WHLASV+SVLEP+ G+AAM KS +LL GRT A +V Y A CG+T
Sbjct: 178 LGVHVYMTAWWHLASVVSVLEPIYGIAAMKKSYELLNGRTNMACSMVFMYLALCGIT--- 234
Query: 241 FRAAVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVFYYACKAFHNQQID 300
A V QSVFYY CK+FH+Q ID
Sbjct: 235 --AGVFGGVVVHGGDDFGLFTKIVVGGFLVGILVIVNLVGLLVQSVFYYVCKSFHHQPID 292
Query: 301 RSALYEHLGGYLGEYVPLKSNIQMENLD 328
+SAL++HLGGYLG+YVPLKS+IQMEN D
Sbjct: 293 KSALHDHLGGYLGDYVPLKSSIQMENFD 320
>AT4G19950.1 | chr4:10809977-10810942 FORWARD LENGTH=322
Length = 321
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 159/333 (47%), Gaps = 16/333 (4%)
Query: 1 MELATHDLAALGAADLVRVSASIPRAAPRTFALLTAGLVFPLSAAVLVHSLFTHPIILRL 60
M+LA +L L ++R S SIP+ + +TF L+T L+FPLS A+L HSLFT PI+ ++
Sbjct: 1 MDLAPEELQFLNKRGILRESTSIPQYSLKTFYLITLTLIFPLSFAILAHSLFTQPILAQI 60
Query: 61 QGANGDYSSSDSAQ----WLKLFAYQXXXXXXXXXXXXXXXXXXXXXVASLYAAKXXXXX 116
Y +D +Q W L +Q VASLY K
Sbjct: 61 D----TYPQADQSQLQHEWTVLLVFQFCYIIFLFAFSLLSTAAVVFTVASLYTGKPVSFS 116
Query: 117 XXXXXXXXXXXXXXXTFLWVSLLMLAYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 176
TFLWVSLLMLAY+
Sbjct: 117 STMSAIPLVLKRLFITFLWVSLLMLAYNTVFLIFLVTLIVAVDLQNVVLAVFSLVVIFVL 176
Query: 177 XXXXXXIHVYISALWHLASVISVLEPLCGLAAMTKSKQLLQGRTRTAGVLVVSYFAACGV 236
HVY++ALWHLASV+SVLEP+ GLAAM KS +LL+G+T A +V Y CG
Sbjct: 177 FLVV---HVYMTALWHLASVVSVLEPIYGLAAMKKSYELLKGKTLMACSMVFIYLVHCGF 233
Query: 237 TAVLFRAAVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVFYYACKAFHN 296
A +F A VV+ QSVFYY CK+FH+
Sbjct: 234 IAGVFGAVVVRGGDDYGIFARIVAGGFLVGVLVIVNLIGLLV-----QSVFYYVCKSFHH 288
Query: 297 QQIDRSALYEHLGGYLGEYVPLKSNIQMENLDA 329
Q+ID+SAL++HLGGYLGEYVPLKSNIQMEN +
Sbjct: 289 QEIDKSALHDHLGGYLGEYVPLKSNIQMENFEV 321
>AT1G31130.1 | chr1:11114963-11115928 REVERSE LENGTH=322
Length = 321
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 153/328 (46%), Gaps = 8/328 (2%)
Query: 1 MELATHDLAALGAADLVRVSASIPRAAPRTFALLTAGLVFPLSAAVLVHSLFTHPIILRL 60
M+L +L L L++ S SI + +PRTF L+T +FPLS A+L HSLFT PI+ +L
Sbjct: 1 MDLQPEELQFLTIPQLLQESISIKKRSPRTFYLITLSFIFPLSFAILAHSLFTQPILAKL 60
Query: 61 QGANGDYSSSDSAQWLKLFAYQXXXXXXXXXXXXXXXXXXXXXVASLYAAKXXXXXXXXX 120
++ S W L +Q VASLY K
Sbjct: 61 DKSDPPNSDRSRHDWTVLLIFQFSYLIFLFAFSLLSTAAVVFTVASLYTGKPVSFSSTLS 120
Query: 121 XXXXXXXXXXXTFLWVSLLMLAYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
TFLWV+LLM AY+
Sbjct: 121 AIPKVFKRLFITFLWVALLMFAYN---AVFFVFLVMLLVALDLNSLGLAIVAGVIISVLY 177
Query: 181 XXIHVYISALWHLASVISVLEPLCGLAAMTKSKQLLQGRTRTAGVLVVSYFAACGVTAVL 240
+HVY +ALWHL SVISVLEP+ G+AAM K+ +LL+G+T+ A L+ Y CG+ V+
Sbjct: 178 FGVHVYFTALWHLGSVISVLEPVYGIAAMRKAYELLKGKTKMAMGLIFVYLFLCGLIGVV 237
Query: 241 FRAAVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVFYYACKAFHNQQID 300
F A VV QSVFYY CK++H+Q ID
Sbjct: 238 FGAVVVH-----GGGKYGTFTRTLVGGLLVGVLVMVNLVGLLVQSVFYYVCKSYHHQTID 292
Query: 301 RSALYEHLGGYLGEYVPLKSNIQMENLD 328
++ALY+ LGGYLG+YVPLKSNIQ+E+LD
Sbjct: 293 KTALYDQLGGYLGDYVPLKSNIQLEDLD 320
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,742,506
Number of extensions: 92403
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 9
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)