BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0797800 Os01g0797800|AK122155
         (121 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80440.1  | chr1:30241763-30242827 FORWARD LENGTH=355           48   1e-06
AT1G15670.1  | chr1:5390119-5391198 FORWARD LENGTH=360             47   2e-06

>AT1G80440.1 | chr1:30241763-30242827 FORWARD LENGTH=355
          Length = 354

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 22  HDEEKNALQTAVAYNAEADAWVPLPDMATERDEARGLY 59
           H+EEK AL +A+ Y+   D W  LPDMA ERDE + ++
Sbjct: 173 HNEEKCALTSAMVYDVSEDKWTFLPDMARERDECKAVF 210



>AT1G15670.1 | chr1:5390119-5391198 FORWARD LENGTH=360
          Length = 359

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 22  HDEEKNALQTAVAYNAEADAWVPLPDMATERDEARGLY 59
           HDE+KNA+ +A+ Y+   D W  LPDM  ERDE   ++
Sbjct: 177 HDEDKNAMMSALVYDVAEDRWAFLPDMGRERDECTAIF 214



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,578,179
Number of extensions: 32030
Number of successful extensions: 110
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 35
Effective length of database: 8,748,793
Effective search space: 306207755
Effective search space used: 306207755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)