BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0784800 Os01g0784800|AK059820
(203 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27270.1 | chr4:13661458-13663243 REVERSE LENGTH=206 304 2e-83
AT5G58800.1 | chr5:23746032-23746895 REVERSE LENGTH=208 256 5e-69
AT4G36750.1 | chr4:17324642-17326215 FORWARD LENGTH=274 250 3e-67
AT5G54500.2 | chr5:22124674-22126435 FORWARD LENGTH=245 243 4e-65
>AT4G27270.1 | chr4:13661458-13663243 REVERSE LENGTH=206
Length = 205
Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/203 (72%), Positives = 162/203 (79%)
Query: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV 60
MA KVY+VYYSMYGHV KLA+EI+KGA+S++GVEA +WQVPETL E+VL KM APPK D
Sbjct: 1 MATKVYIVYYSMYGHVEKLAQEIRKGAASVDGVEAILWQVPETLQEDVLSKMSAPPKSDA 60
Query: 61 PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSXXXXX 120
P ITP EL EADG +FGFPTRFGMMAAQ KAF DATGGLW Q LAGKPAGIF+S
Sbjct: 61 PIITPNELAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQG 120
Query: 121 XXXXXXPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEM 180
LTAITQL HHGM+FVP+GYTFGA MF M V+GGSPYGAGTFA DGSR PTE+
Sbjct: 121 GGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGSRQPTEL 180
Query: 181 ELEHAFHQGKYFAGIAKKLKGSA 203
EL AFHQGKY A I+KKLKG A
Sbjct: 181 ELGQAFHQGKYIAAISKKLKGPA 203
>AT5G58800.1 | chr5:23746032-23746895 REVERSE LENGTH=208
Length = 207
Score = 256 bits (654), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 123/202 (60%), Positives = 158/202 (78%), Gaps = 2/202 (0%)
Query: 1 MAV-KVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPD 59
MAV K+Y+VYYS++GHV +A E+ +G +S+ VEA +WQVPETL E++L K+ A P+PD
Sbjct: 1 MAVTKIYIVYYSLHGHVETMAREVLRGVNSVPDVEATLWQVPETLPEKILEKVKAVPRPD 60
Query: 60 -VPTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSXXX 118
VP I P++L EADG +FGFP+RFG+MA+Q+ FFD T LW+ Q+LAGKPAGIF+S
Sbjct: 61 DVPDIRPEQLAEADGFMFGFPSRFGVMASQVMTFFDNTNDLWTTQALAGKPAGIFWSTGF 120
Query: 119 XXXXXXXXPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPT 178
LTA+T+L HHGM+FVPVGYTFG M+ MGEV+GGSPYG+GT+AADGSR PT
Sbjct: 121 HGGGQELTALTAVTKLAHHGMIFVPVGYTFGKSMYEMGEVKGGSPYGSGTYAADGSREPT 180
Query: 179 EMELEHAFHQGKYFAGIAKKLK 200
E+E++ A + GKYFAGIAKKLK
Sbjct: 181 ELEIQQANYHGKYFAGIAKKLK 202
>AT4G36750.1 | chr4:17324642-17326215 FORWARD LENGTH=274
Length = 273
Score = 250 bits (639), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/198 (62%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 3 VKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKP-DVP 61
+K++VV+YSMYGHV LA+ +KKG S+EGVEA +++VPETL +EV+ +M AP K ++P
Sbjct: 73 LKIFVVFYSMYGHVESLAKRMKKGVDSVEGVEATLYRVPETLSQEVVEQMKAPVKDLEIP 132
Query: 62 TITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSXXXXXX 121
IT ELT ADG LFGFPTR+G MAAQMKAFFD+TG LW EQSLAGKPAG F S
Sbjct: 133 EITAAELTAADGFLFGFPTRYGCMAAQMKAFFDSTGSLWKEQSLAGKPAGFFVSTGTQGG 192
Query: 122 XXXXXPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGSPYGAGTFAADGSRWPTEME 181
TAITQL HHGM+FVP+GYTFGA MF M ++GGSPYGAG FA DGSR TE E
Sbjct: 193 GQETTAWTAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGDGSREATETE 252
Query: 182 LEHAFHQGKYFAGIAKKL 199
L A HQG Y A I K+L
Sbjct: 253 LALAEHQGNYMAAIVKRL 270
>AT5G54500.2 | chr5:22124674-22126435 FORWARD LENGTH=245
Length = 244
Score = 243 bits (621), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 116/162 (71%), Positives = 129/162 (79%)
Query: 1 MAVKVYVVYYSMYGHVAKLAEEIKKGASSIEGVEAKIWQVPETLHEEVLGKMGAPPKPDV 60
MA KVY+VYYSMYGHV KLAEEI+KGA+S+EGVEAK+WQVPETLHEE L KM APPK +
Sbjct: 1 MATKVYIVYYSMYGHVEKLAEEIRKGAASVEGVEAKLWQVPETLHEEALSKMSAPPKSES 60
Query: 61 PTITPQELTEADGILFGFPTRFGMMAAQMKAFFDATGGLWSEQSLAGKPAGIFFSXXXXX 120
P ITP EL EADG +FGFPTRFGMMAAQ KAF DATGGLW Q+LAGKPAGIF+S
Sbjct: 61 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRAQALAGKPAGIFYSTGSQG 120
Query: 121 XXXXXXPLTAITQLTHHGMVFVPVGYTFGAKMFNMGEVQGGS 162
LTAITQL HHGM+FVP+GYTFGA MF M V+ G+
Sbjct: 121 GGQETTALTAITQLVHHGMLFVPIGYTFGAGMFEMENVKAGA 162
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,385,953
Number of extensions: 174935
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 4
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)