BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0778100 Os01g0778100|J065026M10
(229 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05577.1 | chr1:1662643-1664288 REVERSE LENGTH=373 76 1e-14
AT2G28150.1 | chr2:12000015-12002227 FORWARD LENGTH=541 57 5e-09
AT5G59790.1 | chr5:24090950-24092804 FORWARD LENGTH=424 56 1e-08
AT3G46110.1 | chr3:16932244-16933588 FORWARD LENGTH=344 53 1e-07
AT5G10150.1 | chr5:3182176-3183834 REVERSE LENGTH=415 48 4e-06
>AT1G05577.1 | chr1:1662643-1664288 REVERSE LENGTH=373
Length = 372
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
Query: 1 MADNFSWSYKRKYKAGYIWQDLMMDDDLITPISDNEYVLKGCDVRRATESPKE 53
M D FSWS KR+YK GY+WQDL +DDDLITPISDNEYVLKG ++ SPKE
Sbjct: 58 MPDAFSWSCKRRYKNGYVWQDL-LDDDLITPISDNEYVLKGSEI--LLSSPKE 107
>AT2G28150.1 | chr2:12000015-12002227 FORWARD LENGTH=541
Length = 540
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 1 MADNFSWSYKRKYKAGYIWQDLMMDDDLITPISDNEYVLKGCDV 44
MA +SWS KR Y+ G++W DL +DDLI P + NEYVLKG ++
Sbjct: 79 MASMYSWSSKRSYRNGFVWHDL-SEDDLILPANGNEYVLKGSEL 121
>AT5G59790.1 | chr5:24090950-24092804 FORWARD LENGTH=424
Length = 423
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 1 MADNFSWSYKRKYKAGYIWQDLMMDDDLITPISDNEYVLKGCDV 44
MA +SWS KR YK G++W DL +DD I P+ EYVLKG +V
Sbjct: 92 MASLYSWSSKRSYKNGFVWHDL-SEDDFIFPVQGQEYVLKGSEV 134
>AT3G46110.1 | chr3:16932244-16933588 FORWARD LENGTH=344
Length = 343
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 1 MADNFSWSYKRKYKAGYIWQDLMMDDDLITPISDNEYVLKGCDV 44
MA +SWS KR YK G++W DL D+D I P+ EYVLKG +
Sbjct: 65 MACLYSWSSKRTYKNGFVWYDL-SDEDFIFPVHGQEYVLKGSQI 107
>AT5G10150.1 | chr5:3182176-3183834 REVERSE LENGTH=415
Length = 414
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 1 MADNFSWSYKRKYKAGYIWQDLMMDDDLITPISDNEYVLKGCDV 44
M ++WS KR Y+ G++W DL ++D+I P EYVLKG ++
Sbjct: 91 MTSQYAWSCKRSYRNGFVWNDL-AENDVIYPSDCAEYVLKGSEI 133
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,030,666
Number of extensions: 193841
Number of successful extensions: 709
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 5
Length of query: 229
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 134
Effective length of database: 8,502,049
Effective search space: 1139274566
Effective search space used: 1139274566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)