BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0775100 Os01g0775100|AK101217
         (783 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43630.1  | chr5:17527261-17530207 FORWARD LENGTH=832          138   1e-32

>AT5G43630.1 | chr5:17527261-17530207 FORWARD LENGTH=832
          Length = 831

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 97/140 (69%), Gaps = 14/140 (10%)

Query: 658 DEASVVFGALQRLRLSRSDIIRWMRSPVMHTTLDGFFLRLRFGKWEEALGGTGYHVARIN 717
           D    VF A+Q LRLSR+D+++W+ +    + L+GFFLRLR GKWEE LGGTGY+VARI+
Sbjct: 692 DVPRAVFDAVQVLRLSRTDVLKWINTKKSVSGLEGFFLRLRLGKWEEGLGGTGYYVARID 751

Query: 718 GVL---------DKNRLSVTIRNSTCQVDSRFVSNHDFHQDELKAWWSAAMK----SGWK 764
           G           +K+ +SV ++  TC V+S+F+SN DF ++ELKAWW +A K    SG+ 
Sbjct: 752 GDTEGQSSRRHSEKSLISVKVKGVTCLVESQFISNQDFLEEELKAWWQSAGKSARTSGYD 811

Query: 765 -LPSQEELNTKLRERELLRF 783
            +PS EEL+ K+++R++L F
Sbjct: 812 GIPSAEELSRKIQQRKMLGF 831



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.127    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,452,190
Number of extensions: 832850
Number of successful extensions: 1849
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1845
Number of HSP's successfully gapped: 2
Length of query: 783
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 677
Effective length of database: 8,200,473
Effective search space: 5551720221
Effective search space used: 5551720221
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)