BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0771200 Os01g0771200|AK106172
         (198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35900.1  | chr2:15070203-15071540 REVERSE LENGTH=193          125   2e-29
>AT2G35900.1 | chr2:15070203-15071540 REVERSE LENGTH=193
          Length = 192

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 91/175 (52%), Gaps = 15/175 (8%)

Query: 1   MGWRWHXXXXXXXXXXXXXXXXXXXXXXXXXERCATRRVVQSRCHTEEVEPGRFVRKCEK 60
           MGW W                          E C+T  VV+S+C TEEVEPG+FVRKC+K
Sbjct: 1   MGWIW-IDDSSASKAGADLTDKPLGDSAAAAENCSTTTVVRSQCKTEEVEPGKFVRKCDK 59

Query: 61  TEQLLRDCVGRPSELVESKTENTEEDVTDEMKSGS-LSLGFPTNEPFAFPGLRSDIEALE 119
           TE++LR C G+PSE+V+S TE+TEEDVTD+M   S L   F    P  FPGLR D++A+E
Sbjct: 60  TEEILRHCFGKPSEVVQSNTEHTEEDVTDQMVGRSALPNQFEDKNPLNFPGLRRDVDAIE 119

Query: 120 KGLFGSIGSFLDDAERMTNDFLKSFGVPSINERESSSFDGQPTGRHIGGQPAGRH 174
           +     + SF D AE MT+      G            D  P+ R  GG P   H
Sbjct: 120 RHFLSGMKSFFDAAEEMTSSLFDIMG------------DHHPSTRR-GGIPIENH 161
  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,836,352
Number of extensions: 163199
Number of successful extensions: 398
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)