BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0768700 Os01g0768700|AK119498
         (311 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34780.1  | chr2:14668653-14673607 FORWARD LENGTH=1298          72   5e-13

>AT2G34780.1 | chr2:14668653-14673607 FORWARD LENGTH=1298
          Length = 1297

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 131/312 (41%), Gaps = 30/312 (9%)

Query: 6    EVSYKVLLMGKSNLSWTLLAI-HIIGSMCGDKF-LSKSSNFLMTTIRLVVLLLEAKNNSL 63
            E S+++L       +  LL I H+   + G+K  LS      +  ++ +V+ LE K+   
Sbjct: 1003 EASFEILHKYSHEKTSVLLTILHVFAYIAGEKMVLSSEHGISIAVLKYIVMFLENKHFGT 1062

Query: 64   CLLSSYVQSNRPAVFPTCAHCLFXXXXXXXXXGFISSLLDELHLCSQQWNSCSNTNKIIA 123
               SS +        P    C F           + ++  +L    Q++   + +N +  
Sbjct: 1063 VEGSSRLH-------PGKNKCPFSDRSSS-----LEAMASKLMEILQEF---TESNTLHK 1107

Query: 124  RCSPHLGSSGLEVNCGEPCYISKQVKLSEDGHNHTAGRDLCYFAEITSLLELFGNYMSCE 183
              +  LGSS LE     P +   Q  L+ D        +LC   +I SL+EL   Y + +
Sbjct: 1108 SLTGSLGSSHLEKTEFRPAHKDFQCVLTRD-----QSINLC---DILSLVELIACYTAWD 1159

Query: 184  WTYNNVVVRLLKILESCTCEEYSAALLILLSQLGRFFVDDVGYEQRAVSDLRNHLSVLMR 243
            WT  N+V  LLK+L        S A++ LL QL    VD  GYE   +S+LR  LS  ++
Sbjct: 1160 WTSANIVAPLLKMLGMPLPMNLSVAIVSLLGQLSSIGVDAGGYENEGISNLRVKLSAFLQ 1219

Query: 244  TKVSNSRNMPVQLSAIGALLSLLPLAF-----DKIVAHSGQLPDLYVLQGRQISEWFCQL 298
             + +      VQ++ + +LL  L L F     DK     G            +++W   L
Sbjct: 1220 CETTLKAGFAVQIATVSSLLKTLQLKFPIDFQDKTTMIPGSGDQSLSGSVNVVTKWLSLL 1279

Query: 299  SKEHQSIACSFF 310
            SKE +  A  F 
Sbjct: 1280 SKEQRVFAFEFL 1291



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,235,746
Number of extensions: 228586
Number of successful extensions: 710
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 213
Effective length of database: 8,419,801
Effective search space: 1793417613
Effective search space used: 1793417613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)