BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0768400 Os01g0768400|Os01g0768400
         (639 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G40087.1  | chr1:14999762-15001868 REVERSE LENGTH=391           75   8e-14

>AT1G40087.1 | chr1:14999762-15001868 REVERSE LENGTH=391
          Length = 390

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 62/336 (18%)

Query: 74  KGTTLRYVWDLPPGKRIVVKCNRLGQPIGDEGGLLGQFLGTLARNGAYCPLDKMTWRKIK 133
           K  T + VW +   + IV       QPIGD GGLLG +L  L+ +    P++   WR + 
Sbjct: 50  KMMTSKDVWIMQNHRVIVHFDEYTNQPIGDSGGLLGSWLSQLSNDIMLLPINYTDWRLVS 109

Query: 134 ADEGDLTILQFVQTKFLY--PPSCVQWILKSIG--------RDWRRYKAALKDKYFNPKK 183
               D      +Q+KF +  P     +++ ++G        R WR YK          + 
Sbjct: 110 PHIKDRA-WAVIQSKFRFDDPMMRKDYVMGALGSKCKDVKLRFWREYK----------RN 158

Query: 184 KRSALYKLCPDDVEKDQWIPLIKYWKSKKGKALSAKNKRSRSMLQNPHSAGTKSYARWSE 243
             +   +  P+ V +DQW  L+    + K + +  +N +++     PH  G KS++R  +
Sbjct: 159 NLNETLQNRPEKVPEDQWSHLVHLIFTDKWRKMQERNTKNQKNHIMPHLCGRKSFSRKRD 218

Query: 244 DLRQDDPNKKQPHRAMVTLEN----------------------LIDEQPELAQNDQGRVA 281
           +++      K P RA   +E+                      L++  P++  N    + 
Sbjct: 219 EIKIK--TGKTPCRAEFFIESRKKHDGSFVSDEAKLRAEALTTLLNLNPQVTYNGTASL- 275

Query: 282 WEGDALNKVLGKEKPGQVHGMGLLPVPKQVYGRTSHHLKNINITTVNDSSSDEETHVRGE 341
              D  ++V G E+PG+V  +G  P P ++       +++ N T   D  + E       
Sbjct: 276 --DDEYSQVFGPERPGRVRCVGRGPTPSRL-------VRHSNATRRQDIENSE------L 320

Query: 342 VGELKKLVKTLGQRIEELEN-KGTSNGNSEPTMATS 376
           V +LK  VKTLG ++  +    G   GNS    A++
Sbjct: 321 VAQLKTQVKTLGDQVNAMSTFLGQILGNSTGEQASA 356



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,860,593
Number of extensions: 665334
Number of successful extensions: 2052
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2049
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 534
Effective length of database: 8,227,889
Effective search space: 4393692726
Effective search space used: 4393692726
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)