BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0764300 Os01g0764300|J090053G03
         (275 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69380.1  | chr1:26081729-26083431 REVERSE LENGTH=374          214   3e-56
AT5G13610.1  | chr5:4383073-4384808 FORWARD LENGTH=403            200   8e-52

>AT1G69380.1 | chr1:26081729-26083431 REVERSE LENGTH=374
          Length = 373

 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/210 (53%), Positives = 141/210 (67%), Gaps = 38/210 (18%)

Query: 91  DEGLARCIPVKAYFLSTRYDI-GVKDNRFCY----------------------------- 120
           +E L + IP+KAYFLST  D+  ++    C                              
Sbjct: 81  EEALGK-IPIKAYFLSTSIDLKAMQAENLCNVVPPTSRSTNYIALKFSDFTPSGIYSLDE 139

Query: 121 -------RYVVVFQYGSAVLFNIADHEAEHYLDIIRKHASGWLPEMRKDDYAVVEKPSLT 173
                  +++VVFQYGSA+LFN+ D++ + YLDI+R+HASG L EMRKDDYAV EKP L 
Sbjct: 140 RESVSNCKFMVVFQYGSAILFNVDDNDVDRYLDIVRRHASGLLTEMRKDDYAVKEKPLLI 199

Query: 174 TWMKGGLDYIVLKSLDTDGIRIIASVLGQSIALDHYIRQVDDMVEEFTEINRVMEKTGNF 233
             MKGG DYIVLK+LDT+ IRII SVLGQSIALD+ + QV+ +VEEF +INR M KTG F
Sbjct: 200 EEMKGGPDYIVLKTLDTNSIRIIGSVLGQSIALDYSVSQVNKLVEEFADINRSMAKTGTF 259

Query: 234 TMQRKKLFQLVGKANSNLADVIIRLGLFDR 263
           TM RKKLFQLVGKANSN+ADVI+++GLF+R
Sbjct: 260 TMTRKKLFQLVGKANSNIADVILKVGLFER 289



>AT5G13610.1 | chr5:4383073-4384808 FORWARD LENGTH=403
          Length = 402

 Score =  200 bits (508), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 115/142 (80%)

Query: 122 YVVVFQYGSAVLFNIADHEAEHYLDIIRKHASGWLPEMRKDDYAVVEKPSLTTWMKGGLD 181
           Y+VVF YGS VLFN+ +HE + YL ++ +HASG LPEMRKD+Y V E P+L TWM+ G D
Sbjct: 181 YMVVFHYGSIVLFNVREHEVDEYLKVVERHASGLLPEMRKDEYEVRENPNLDTWMEVGRD 240

Query: 182 YIVLKSLDTDGIRIIASVLGQSIALDHYIRQVDDMVEEFTEINRVMEKTGNFTMQRKKLF 241
           +I L+ L+TDGIR I  VLGQSIALD+Y RQVD MV EFTEINR +E TG FTM+RKKLF
Sbjct: 241 FIRLQFLNTDGIRTIGCVLGQSIALDYYGRQVDGMVAEFTEINRQLEITGTFTMKRKKLF 300

Query: 242 QLVGKANSNLADVIIRLGLFDR 263
           QLVGKAN  LADVI++LGLF+R
Sbjct: 301 QLVGKANVILADVILKLGLFER 322



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,409,749
Number of extensions: 168228
Number of successful extensions: 500
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)