BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0761000 Os01g0761000|J065091N13
         (151 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52220.1  | chr1:19453770-19454605 REVERSE LENGTH=157           75   2e-14
AT2G46820.1  | chr2:19243729-19244870 FORWARD LENGTH=175           68   2e-12

>AT1G52220.1 | chr1:19453770-19454605 REVERSE LENGTH=157
          Length = 156

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 51  KAAQDSSEPSSG-SVVKYVQSSFSSPEDXXXXXXXXXXXXXXXWASINLVEVIDKLPVLP 109
           KA+ +SS+ S+   VV  +Q+ +   ED               WAS+NL+  IDKLPV+ 
Sbjct: 55  KASGESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVIS 114

Query: 110 LLFELIGILVAWLFIYQNLLFKPDREKFLNNIKSSVSRVLGQ 151
             FEL+GIL +  F Y+ LLFKPDR++    +K SV+ +LGQ
Sbjct: 115 SGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156



>AT2G46820.1 | chr2:19243729-19244870 FORWARD LENGTH=175
          Length = 174

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 13/138 (9%)

Query: 26  LPMLPAVPSTRFVSGRMRSRNVVAAKAAQDSSE-------------PSSGSVVKYVQSSF 72
           LP LP    TR        R +V     + ++E                  +VK  Q ++
Sbjct: 35  LPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAW 94

Query: 73  SSPEDXXXXXXXXXXXXXXXWASINLVEVIDKLPVLPLLFELIGILVAWLFIYQNLLFKP 132
              +D               W S  ++  ID+LP++P + EL+GI     F Y+NL+FKP
Sbjct: 95  EKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKP 154

Query: 133 DREKFLNNIKSSVSRVLG 150
           DRE     +KS+   +LG
Sbjct: 155 DREALFEKVKSTYKDILG 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,467,517
Number of extensions: 81500
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 61
Effective length of database: 8,639,129
Effective search space: 526986869
Effective search space used: 526986869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)