BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0760900 Os01g0760900|AK107573
         (254 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46225.2  | chr2:18982113-18984074 FORWARD LENGTH=330           84   6e-17
AT3G49290.1  | chr3:18273407-18275221 FORWARD LENGTH=313           76   2e-14
AT5G24310.1  | chr5:8274637-8276325 FORWARD LENGTH=322             76   2e-14
AT5G42030.1  | chr5:16811518-16813087 REVERSE LENGTH=280           64   7e-11

>AT2G46225.2 | chr2:18982113-18984074 FORWARD LENGTH=330
          Length = 329

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 62/93 (66%), Gaps = 1/93 (1%)

Query: 37  GFDGALRELKDLRSQLHQTADCCEKAFLDTEKKKLILESTKGYICDAIVAVIDHLGTVSS 96
            F  AL+ELK+LR QL+  AD CEK++L +E+K+++L++ K Y   A+V  +DHLGTV+S
Sbjct: 25  SFVKALQELKNLRPQLYSAADYCEKSYLHSEQKQMVLDNLKDYTVKALVNAVDHLGTVAS 84

Query: 97  KLEQQL-QEKIEITQTEKKLNFLKQRLLTCEQY 128
           KL      +  +I+  E + + + Q+LLTC  Y
Sbjct: 85  KLTDLFDHQNSDISTMEMRASCVSQQLLTCRTY 117



>AT3G49290.1 | chr3:18273407-18275221 FORWARD LENGTH=313
          Length = 312

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 79/126 (62%), Gaps = 9/126 (7%)

Query: 31  SLIGAAGFDGALRELKDLRSQLHQTADCCEKAFLDTEKKKLILESTKGYICDAIVAVIDH 90
           S+  +  F   L++LK+LR+QL+  A+  E ++   +KK++++E+ K Y   A+V  +DH
Sbjct: 14  SMQQSMLFSDGLQDLKNLRAQLYSAAEYFELSYTTDDKKQIVVETLKDYAVKALVNTVDH 73

Query: 91  LGTVSSKLEQQLQEKI-EITQTEKKLNFLKQRLLTCEQY----AITLKLLTVRGDNDAIQ 145
           LG+V+ K+   + EK+ E+++TE +++ ++QRL  C++Y      + + L +    D  +
Sbjct: 74  LGSVTYKVNDFIDEKVDEVSETELRVSCIEQRLRMCQEYMDHEGRSQQSLVI----DTPK 129

Query: 146 YHRRYL 151
           +H+RY+
Sbjct: 130 FHKRYI 135



>AT5G24310.1 | chr5:8274637-8276325 FORWARD LENGTH=322
          Length = 321

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 15/143 (10%)

Query: 20  ASGAAPFGRSSS------LIGAAGFDGALRELKDLRSQLHQTADCCEKAFLDTEKKKLIL 73
           A+   P  R +S      +  +  F  +L++LK+LR+QL+  A+  E ++ + E+K++++
Sbjct: 3   AAATMPMPREASNYDEISMQQSMLFSDSLKDLKNLRTQLYSAAEYFELSYTNDEQKQIVV 62

Query: 74  ESTKGYICDAIVAVIDHLGTVSSKLEQQLQEKI-EITQTEKKLNFLKQRLLTCEQY---- 128
           E+ K Y   A+V  +DHLG+V+ K+   + EK+ E+  TE +++ ++QRL  C++Y    
Sbjct: 63  ETLKDYAIKALVNTVDHLGSVTYKVNDFVDEKVDEVAGTELRVSCIEQRLRMCQEYMDHE 122

Query: 129 AITLKLLTVRGDNDAIQYHRRYL 151
             + + L +    D  ++H+RY 
Sbjct: 123 GRSQQSLVI----DTPKFHKRYF 141



>AT5G42030.1 | chr5:16811518-16813087 REVERSE LENGTH=280
          Length = 279

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 38  FDGALRELKDLRSQLHQTADCCEKAFLDTEKKKLILESTKGYICDAIVAVIDHLGTVSSK 97
           F   L++LK+LR QL+  A+  E ++   E K+ ++E+ K Y   A+V  +DHLG+VS K
Sbjct: 28  FSETLKDLKNLRKQLYSAAEYFETSYGKAEHKETVIETLKEYAAKAVVNTVDHLGSVSDK 87

Query: 98  LEQQLQEK-IEITQTEKKLNFLKQRLLTCEQY 128
               L +     + T  +L+ L+QR+  C  Y
Sbjct: 88  FNSFLSDNSTHFSTTHLRLSSLEQRMRLCRDY 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,150,518
Number of extensions: 207967
Number of successful extensions: 504
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 4
Length of query: 254
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 158
Effective length of database: 8,474,633
Effective search space: 1338992014
Effective search space used: 1338992014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)