BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0759700 Os01g0759700|AK101627
         (265 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29220.2  | chr1:10210678-10212571 REVERSE LENGTH=364          165   2e-41

>AT1G29220.2 | chr1:10210678-10212571 REVERSE LENGTH=364
          Length = 363

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 121/244 (49%), Gaps = 18/244 (7%)

Query: 40  ADNMQNDDPLSRFLPPPVTAKCSAALQ------------QKINKFLAYKRAGKSFNSEVR 87
           A    +D  L +FLPP    +CS  LQ            +KI+KFL+ K+ GKSFNSEVR
Sbjct: 120 ASGESSDTLLDQFLPPRPRERCSEELQARTHWCVVWGLLRKIDKFLSLKKMGKSFNSEVR 179

Query: 88  NRKDYRNPDFLQHAVRYQEIDQIGTCFSKDVFDPYGYDRSDYYDEIEADMXXXXXXXXXX 147
           NRK+YRNPDFL HAV YQ+IDQIG+CFSKDVFDP GYD SD+ D IE DM          
Sbjct: 180 NRKEYRNPDFLLHAVSYQDIDQIGSCFSKDVFDPSGYDPSDFCDAIEIDMKNERERKEQE 239

Query: 148 XXXSGKVDFITGGVQXXXX-XXXXXXXXXXXXXXXXXXXXXXXXGEGVQKEARPNKKSKW 206
              + K+DF++ G Q                              E   ++ RPNKKSKW
Sbjct: 240 SKKNQKLDFVSAGTQPGAVFAAQKPNIPIPGIPALATSGLPSIPTEIAARDGRPNKKSKW 299

Query: 207 DKVDGDIKNPVAPSGXXXXXXXXXXXXXXV-----GAGYXXXXXXXXXXXXXXXTSDHKS 261
           DKVDGD+KNP   +G              V     G+GY               +S+ K 
Sbjct: 300 DKVDGDVKNPPLAAGTQDSISSIRSNAALVSATSAGSGYSAFAQQRRREVEGRRSSERKL 359

Query: 262 DRRS 265
           +RRS
Sbjct: 360 ERRS 363



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,306,554
Number of extensions: 140115
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 168
Effective length of database: 8,447,217
Effective search space: 1419132456
Effective search space used: 1419132456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)