BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0759000 Os01g0759000|AK111031
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78810.1  | chr1:29628538-29630510 REVERSE LENGTH=482           74   1e-13

>AT1G78810.1 | chr1:29628538-29630510 REVERSE LENGTH=482
          Length = 481

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 153 RFFQELLEKDAGLRGFYEAEREKGRFLCLVCEGIGARAGKRFAGCAALVQHAGSVARAGR 212
           +F   + E++  L+ +YE     G F CLVC GIG ++ ++F  C AL+QH+ ++ +   
Sbjct: 187 QFLSRVFEENVKLKEYYEKNTGNGEFWCLVCGGIGEKSCRKFKSCLALIQHSLTIHKTDL 246

Query: 213 RMAHRAFADAVGRLLGWSAGR-TTALQTDS 241
           ++ HRA A  V  +LGW       + Q DS
Sbjct: 247 KIQHRALAQVVCNVLGWDVNNPVVSSQKDS 276




 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 21/120 (17%)

Query: 151 VARFFQELLEKDAGLRGFYEAEREKGRFLCLV-CEGIGARAGKRFAGCAALVQHAGSVAR 209
           +++ F E +E    L+ +YE   E G F+CLV C     +  KRF  C  +VQH   V +
Sbjct: 351 ISKVFSENVE----LKSYYEKNYEGGAFICLVCCAATDKKMLKRFKHCYGVVQHCTKVPK 406

Query: 210 AGRRMAHRAFADAVGRLLGW--------------SAGRTTALQTDSDNAGMCDEDIHCED 255
              R AH+ FA  V  LLGW              S   + A + + + + M +E + CED
Sbjct: 407 MKIR-AHKVFAQFVCELLGWDFELLPRRVMKGVASLAISNANENNENTSSMVEEHM-CED 464



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,029,136
Number of extensions: 118315
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)