BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0757600 Os01g0757600|Os01g0757600
(345 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60210.1 | chr5:24243529-24245889 REVERSE LENGTH=565 65 6e-11
AT1G78430.1 | chr1:29509605-29510679 FORWARD LENGTH=325 64 1e-10
AT1G17140.1 | chr1:5856740-5857861 REVERSE LENGTH=345 60 2e-09
AT2G37080.1 | chr2:15581565-15584057 REVERSE LENGTH=584 57 1e-08
AT3G53350.1 | chr3:19780190-19781555 REVERSE LENGTH=397 55 8e-08
>AT5G60210.1 | chr5:24243529-24245889 REVERSE LENGTH=565
Length = 564
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 67/104 (64%), Gaps = 5/104 (4%)
Query: 74 ELPQRASPRAPLHLKTTACSDANGAHHRTVVDRS----SPKLADRHSPRSPLHEKKRAGT 129
++P++ SPRA LK A + + + +R+ SP + +R SPRSP+ EKKR +
Sbjct: 12 DVPKKVSPRAARPLKIAALEPESSSSPISATNRTPKDKSPNVLNRRSPRSPVSEKKRP-S 70
Query: 130 RVAELETKLGKVQDELKKLREQLATAEAAKKDAQVALEEAKKRV 173
R+ ELE + ++Q+ELKK ++Q++ +E +KK A+ EE++K++
Sbjct: 71 RITELELLVSQLQEELKKAKDQISVSETSKKQAEQEAEESRKQL 114
>AT1G78430.1 | chr1:29509605-29510679 FORWARD LENGTH=325
Length = 324
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 15/108 (13%)
Query: 74 ELPQRASPRAPLHLKTTACSDANGAHH--RTVVDRSSPKLA-DRHSPRS------PLHEK 124
ELPQR SPR L+T+ S ++ HH R + DRS PKL DR SPRS PL +K
Sbjct: 10 ELPQRQSPR----LRTSLLSTSSDPHHLSRPITDRS-PKLGLDRRSPRSGGPHTDPLSQK 64
Query: 125 KRAGTRVAELETKLGKVQDELKKLREQLATAEAAKKDAQVALEEAKKR 172
K G+R++ LE++LG+ Q+EL+ L++QLA AEAAKK AQ L K +
Sbjct: 65 K-LGSRISGLESQLGQAQEELRLLKQQLAKAEAAKKRAQEELHRKKSK 111
>AT1G17140.1 | chr1:5856740-5857861 REVERSE LENGTH=345
Length = 344
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 12/106 (11%)
Query: 74 ELPQRASPRAPLHLKTTACSDANGAHHRTVV-DRSSPKLADRHSPRS------PLHEKKR 126
EL QR +PR L++++ + + +R + D+S DR SPRS PL +KK
Sbjct: 8 ELSQRQAPR----LRSSSSTSDSNHSNRLITTDQSFKPGVDRKSPRSGGPNSDPLGQKKL 63
Query: 127 AGTRVAELETKLGKVQDELKKLREQLATAEAAKKDAQVALEEAKKR 172
G R+++LE++LG+ Q+EL+ L+EQLA AEA KK AQ L + K+
Sbjct: 64 GG-RISDLESQLGQAQEELRLLKEQLANAEAVKKQAQDELHKKSKK 108
>AT2G37080.1 | chr2:15581565-15584057 REVERSE LENGTH=584
Length = 583
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 9/108 (8%)
Query: 74 ELPQRASP----RAPLHLKTTACSDANGAHHRTVVDRS-SPKL-ADRHSPRSPLHE--KK 125
E+PQ+ SP + LKT+ + + + ++ SPK+ ADR SPR+P++E KK
Sbjct: 12 EVPQKKSPASTPKTARKLKTSESDPVSSPNTKIRTPKTQSPKVVADRRSPRTPVNEIQKK 71
Query: 126 RAGTRVAELETKLGKVQDELKKLREQLATAEAAKKDAQVALEEAKKRV 173
R G + EL +++ ++Q+ELKK +EQL+ +EA KK+AQ EE K+++
Sbjct: 72 RTG-KTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQL 118
>AT3G53350.1 | chr3:19780190-19781555 REVERSE LENGTH=397
Length = 396
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 74 ELPQRASPR-APLHLKTTACSDANGA-HHRTVVDRSSPKL-ADRHSPRSPLHE--KKRAG 128
ELPQ+ SP AP ++ S A +T+ PK+ ADR S R PL+E KKR G
Sbjct: 12 ELPQKKSPLPAPKVVRRLKPSGAESDPKTKTISKTQIPKVVADRRSARIPLNEIQKKRTG 71
Query: 129 TRVAELETKLGKVQDELKKLREQLATAEAAKKDAQVALEEAK 170
R+ ELE+ + ++Q+ELKK +E+L +EA K++AQ E+AK
Sbjct: 72 -RIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAK 112
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.304 0.122 0.329
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,053,236
Number of extensions: 165373
Number of successful extensions: 754
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 112 (47.8 bits)