BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0757500 Os01g0757500|AK121744
         (226 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30070.2  | chr1:10546794-10548072 REVERSE LENGTH=230          240   4e-64
AT1G30060.1  | chr1:10545087-10545906 REVERSE LENGTH=177           47   6e-06

>AT1G30070.2 | chr1:10546794-10548072 REVERSE LENGTH=230
          Length = 229

 Score =  240 bits (613), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 153/215 (71%), Gaps = 9/215 (4%)

Query: 18  GLAKRPRVLSALANEIRAVDAKLAKATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYV 77
            +AKRPRVL+ + +EI  ++    + +                               YV
Sbjct: 17  NIAKRPRVLNLINSEISNLEK--LRDSAVSSNAKPKVPVTVPAPVSSSGKPVSSSALNYV 74

Query: 78  TLGSFSWDQDAEKIKIYVFLEGVEQDKVETTFKPMSVDTKFHDVKGKNYRCAIPKLHKEI 137
           TLG+FSWDQD +K+K+Y+ LEGV++DKV+  FKPMS+D K HDV+GKNYRCAIPKL KEI
Sbjct: 75  TLGTFSWDQDNDKVKMYISLEGVDEDKVQAEFKPMSLDIKIHDVQGKNYRCAIPKLCKEI 134

Query: 138 VPEKCKVLVKPTKIIVTLYKASKGNWLDLHFKEDKF-------KPSMAKEKDPMSGIMDL 190
           +PEKCKVLVKP +I++T+ K+S+GNWLD+H KEDK+       KPS+ KEKDPM+GIM +
Sbjct: 135 MPEKCKVLVKPKRIVITMVKSSRGNWLDIHHKEDKYCLLFVQIKPSLEKEKDPMAGIMGM 194

Query: 191 MKNMYEEGDEDMKRTIAKAWSDARSGKTADSVRGL 225
           MKN+YE+GDE+MK+TIAKAW+DARSGK AD ++GL
Sbjct: 195 MKNLYEDGDEEMKKTIAKAWTDARSGKAADPLKGL 229



>AT1G30060.1 | chr1:10545087-10545906 REVERSE LENGTH=177
          Length = 176

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 26/28 (92%)

Query: 197 EGDEDMKRTIAKAWSDARSGKTADSVRG 224
           +GDE+MK+TIAKAW+DARSGK AD ++G
Sbjct: 148 DGDEEMKKTIAKAWTDARSGKAADPLKG 175



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,826,838
Number of extensions: 150989
Number of successful extensions: 426
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 131
Effective length of database: 8,502,049
Effective search space: 1113768419
Effective search space used: 1113768419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)