BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0756400 Os01g0756400|AK105125
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46250.1  | chr5:18755388-18758056 FORWARD LENGTH=423           67   5e-12

>AT5G46250.1 | chr5:18755388-18758056 FORWARD LENGTH=423
          Length = 422

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 21/149 (14%)

Query: 4   NWRTGMKVRLAKRTVGS-GKHNQSSKENQAIQGQPSKVEQQMVSEKNGGTDSVESAFDNE 62
           +WR G++V+L ++  G   +   + +E    +    +V  Q   EKN  T         E
Sbjct: 271 DWRNGLRVKLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKT--------RE 322

Query: 63  NVNSNISHEDMH------QHQKVNAKGGRKGRYKSQGRGQIQQNTSGQGHVSSPATSGSD 116
           + N  + H D         HQK   K G KGR   QGR Q  Q  +G GH ++ ++S  +
Sbjct: 323 HQNHRLHHSDNPADDDGGNHQK--DKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPN 380

Query: 117 H----VNKPIPGPRMPDGTRGFTMGRGKS 141
           +    V+K  PGPRMPDGTRGFTMGRGK+
Sbjct: 381 YHPVEVSKRPPGPRMPDGTRGFTMGRGKA 409



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.304    0.124    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,689,234
Number of extensions: 165619
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 3
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 107 (45.8 bits)