BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0755100 Os01g0755100|AK066203
         (735 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18490.1  | chr4:10204388-10208197 FORWARD LENGTH=757           89   7e-18

>AT4G18490.1 | chr4:10204388-10208197 FORWARD LENGTH=757
          Length = 756

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 644 ISELELPALLENDVNVQKAEACRKELEDLCISLKRKHEEAKELAVRAIVNNNTMLMLNHP 703
           ++ LE+P + EN  N++KAEA  KELE++C  LK+KHEEAKEL VRA+V+NN +LMLNHP
Sbjct: 689 MANLEIP-ITENADNIEKAEAYTKELENICNILKKKHEEAKELLVRAVVDNNKLLMLNHP 747

Query: 704 MFEDKICAL 712
           ++ED+I  L
Sbjct: 748 LYEDQISFL 756



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.123    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,246,597
Number of extensions: 734177
Number of successful extensions: 2302
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2300
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 629
Effective length of database: 8,200,473
Effective search space: 5158097517
Effective search space used: 5158097517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 115 (48.9 bits)