BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0750500 Os01g0750500|AK067516
         (215 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11500.1  | chr5:3676747-3678946 FORWARD LENGTH=216            319   8e-88

>AT5G11500.1 | chr5:3676747-3678946 FORWARD LENGTH=216
          Length = 215

 Score =  319 bits (817), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 148/215 (68%), Positives = 176/215 (81%)

Query: 1   MVFYYKARPDAGDYTIYMGADKNENEELIKYGLPEDVWFHVDKVSSAHVYLRLKKGESID 60
           MVFY+KARPDAGDYTI+MG DK ENEELIKYG PEDVWFHVDK+SSAHVYLRL +G+S D
Sbjct: 1   MVFYFKARPDAGDYTIFMGLDKFENEELIKYGFPEDVWFHVDKMSSAHVYLRLHRGQSFD 60

Query: 61  SICDGLLEDCAQLVKAHSIQGNKMNNVEVVYTPWSNLKKSPSMDVGQVGFHNTRMVRVVI 120
            I +G+LEDCAQLVKA+SIQGNK+NNV+VVYTPWSNLKK+ SMDVGQVGFHN++MVR + 
Sbjct: 61  DISEGVLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTIR 120

Query: 121 VEKRVNEIINRLNKTRVERRPDLKAEKDASNAAEKAXXXXXXXXXXXXXXXXXXXXXXXA 180
           VEKRVNEI+NRLNKT+VER PDL+AE++A NAAE+A                       +
Sbjct: 121 VEKRVNEIVNRLNKTKVERTPDLRAEREAVNAAERAERKQHLREKKKREEIDRLEKERQS 180

Query: 181 EIRSYKGLMVAEKMTSNRQIASAGNSMQEMEDDFV 215
           E+RSYKGLMV +KMTSN+ IAS+  S+QE+EDDF+
Sbjct: 181 EMRSYKGLMVTDKMTSNKDIASSNKSLQELEDDFM 215



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,029,941
Number of extensions: 149520
Number of successful extensions: 385
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)