BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0748300 Os01g0748300|Os01g0748300
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141 70 3e-13
AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137 60 5e-10
AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184 59 6e-10
AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169 56 5e-09
AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244 56 6e-09
AT4G18980.1 | chr4:10398973-10399293 FORWARD LENGTH=107 55 2e-08
AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158 53 5e-08
AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149 51 2e-07
AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204 48 1e-06
AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202 48 2e-06
>AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141
Length = 140
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 53/93 (56%), Gaps = 18/93 (19%)
Query: 43 SSSAPVRIPAPTTTTFAGARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGR 102
SSS PV IP +T Y +DDG R +++PPH+ V R EG
Sbjct: 64 SSSLPVNIPMRRYST----EEEYSDDDGGR-----------KMIPPHLIVG---RRMEGG 105
Query: 103 TVASSVCVGHGRTLKGRDLRAVRNAVLHMTGFL 135
+A SVC G+GRTLKGRDL VRN+VL +TGFL
Sbjct: 106 QMAFSVCTGNGRTLKGRDLSRVRNSVLKLTGFL 138
>AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137
Length = 136
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 43 SSSAPVRIPAPTTTTFAGARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGR 102
SSS PV IP R Y + + ++PPH+ + R +G
Sbjct: 52 SSSLPVSIPENIF-------RRYVGKEEDEYSEEEYSEGGGEMIPPHIMIG---RRIQGG 101
Query: 103 TVASSVCVGHGRTLKGRDLRAVRNAVLHMTGFL 135
+A SVC G GRTLKGRDL VRN+VL +TGFL
Sbjct: 102 QMAFSVCSGSGRTLKGRDLSRVRNSVLRLTGFL 134
>AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184
Length = 183
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query: 83 SRIVPPHVYVAAARRGSEGRTVASSVCVGHGRTLKGRDLRAVRNAVLHMTGFLG 136
S +VPPH YVAA R +G SSV +G GRTLKGRD+R VR+AV TGF G
Sbjct: 133 SAMVPPHEYVAARSRNGDG---GSSVFLGVGRTLKGRDMRRVRDAVWSQTGFYG 183
>AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169
Length = 168
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 85 IVPPHVYVAAARRGSEGRTVASSVCVGHGRTLKGRDLRAVRNAVLHMTGFL 135
+VPPH +VA R+ + + + S+C G GRTLKGRDL VRNAVL TGFL
Sbjct: 119 MVPPHEWVA--RKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFL 167
>AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244
Length = 243
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 45 SAPVRIPAPTTTTFAGARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGRTV 104
SAPV++P + A R E T ++PPH VA R ++ +
Sbjct: 157 SAPVQVP---LVSSAMMNRHKKEFKLTDVVDDDEEEEEGEMLPPHEIVA--RSLAQSSLL 211
Query: 105 ASSVCVGHGRTLKGRDLRAVRNAVLHMTGFL 135
+ SV G GRTLKGRDLR VRNAV TGF+
Sbjct: 212 SCSVLEGAGRTLKGRDLRQVRNAVFRRTGFI 242
>AT4G18980.1 | chr4:10398973-10399293 FORWARD LENGTH=107
Length = 106
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 61/135 (45%), Gaps = 34/135 (25%)
Query: 2 EELQEADVLWPAEHH-RDYERCRHHHHAAQPAVCPVAPLRPSSSSAPVRIPAPTTTTFAG 60
EE QE++V++ E R + H++ + + S+PVRIP+ TT
Sbjct: 3 EEFQESEVIFSDESFTRKDNKISHNNENYERKSTEKDKI-----SSPVRIPSRTTI---- 53
Query: 61 ARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGRTVASSVCVGHGRTLKGRD 120
Y E++G T PPHV + R ++ +A S C TLKGRD
Sbjct: 54 ---RYTEEEGEMT-------------PPHVIIEKRRTEAQ---MAFSFC-----TLKGRD 89
Query: 121 LRAVRNAVLHMTGFL 135
L RN VL MTGFL
Sbjct: 90 LSRHRNTVLRMTGFL 104
>AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158
Length = 157
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 85 IVPPHVYVAAARRGSEGRTVASSVCVGHGRTLKGRDLRAVRNAVLHMTGFL 135
+VPPH VA +R + + + S+C G GRTLKGRDL RNAVL TGFL
Sbjct: 96 MVPPHELVA--KRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFL 144
>AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149
Length = 148
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 86 VPPHVYVAAARRGSEGRTVASSVCVGHGRTLKGRDLRAVRNAVLHMTGFL 135
+PPH Y+A R S SV G GRTLKGRD+ VRNA+L TGFL
Sbjct: 104 LPPHEYLAKTRMAS------FSVHEGIGRTLKGRDMSRVRNAILEKTGFL 147
>AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204
Length = 203
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 83 SRIVPPHVYVAA--ARRGSEGRTVASSVCVGHGRTLKGRDLRAVRNAVLHMTGFLG 136
S ++PPH Y+A ARR + +SV G GRTLKGR+LR VR+A+ TGF G
Sbjct: 148 SGMMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGFYG 203
>AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202
Length = 201
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 85 IVPPHVYVAAAR-RGSEGRTVASSVCVGHGRTLKGRDLRAVRNAVLHMTGFLG 136
++PPH Y+A ++ R S SV G GRTLKGR+LR VR+A+ TGF G
Sbjct: 149 MMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFYG 201
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,387,117
Number of extensions: 137162
Number of successful extensions: 543
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 11
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)