BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0748200 Os01g0748200|J090004F19
         (356 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58800.1  | chr3:21748562-21749596 FORWARD LENGTH=345          254   7e-68

>AT3G58800.1 | chr3:21748562-21749596 FORWARD LENGTH=345
          Length = 344

 Score =  254 bits (648), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 120/284 (42%), Positives = 170/284 (59%), Gaps = 2/284 (0%)

Query: 73  SPTVGSIGGARAIWELPAAPARAVLFVAHGCHCRPENFWPPSPRCPGCVGLPEDVAITEX 132
            PT+      + IW +P +P +AVLF+AHGCH +  +FW  S  CP C GLPE+  +   
Sbjct: 63  QPTLEIQNETQLIWTIPNSP-KAVLFIAHGCHRKASDFWDKSSDCPQCTGLPEERILMRF 121

Query: 133 XXXXXXXXXXXXXXXECWSMGKEVSAAKRGIRSWATENGLADLPVAALGASSGGYFVSRL 192
                           CW+ GKE +     I+SW  ++ L  LP+ ALGASSGGYFVS L
Sbjct: 122 ALARKFAVLTVSSTGTCWTFGKEKTIVGSIIKSWVEKHKLERLPLVALGASSGGYFVSAL 181

Query: 193 AAEMKLAAVVLMIAEGSFXXXXXXXXXXXXMFLHMPKDQRRAALVERNSKMLRSNGVEVN 252
           A EM+ +++VLMIAEG F            +F+HMPKD  R   +    + LR  G++  
Sbjct: 182 ATEMQFSSIVLMIAEGVFDQISISKQYPPTLFVHMPKDVYRQQKIREFLEGLRMEGIDAA 241

Query: 253 ELRSLELPLTPTMLSDRIPGLNRGLSERIWRVFTEDGFVDERGFMRKDGRATPWKDAVVK 312
           E+  L+LP++P  L+DRIPGL+  +S +++++F + GFVDE+G+M++DGR TPWK A+  
Sbjct: 242 EIECLDLPISPDFLADRIPGLDSDVSAKLFKLFRDKGFVDEKGYMKRDGRRTPWKQALSG 301

Query: 313 RGFWEEVAGWADHIQEELNLAYGYHEMTSLHTDEMFDWIEEHLS 356
                E       ++EELNLAY YHEMTSL +D++F W E H+S
Sbjct: 302 YKISLE-QSLITPVEEELNLAYAYHEMTSLQSDQIFSWFESHMS 344



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,497,534
Number of extensions: 246784
Number of successful extensions: 512
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,364,969
Effective search space: 2141432064
Effective search space used: 2141432064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)