BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0743600 Os01g0743600|AK103798
         (535 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25740.1  | chr2:10980175-10983632 FORWARD LENGTH=548          416   e-116

>AT2G25740.1 | chr2:10980175-10983632 FORWARD LENGTH=548
          Length = 547

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/544 (43%), Positives = 317/544 (58%), Gaps = 21/544 (3%)

Query: 7   ILERERRQVEQILELDMEELQVEEVDDAGSSSSSEVDT----FLRNTHGDG-GSRTSEAL 61
           I ERER Q+EQI ELD EELQVEEVDD   S S + +     F  ++H    G+   + L
Sbjct: 6   IRERERLQIEQIRELDFEELQVEEVDDLHDSDSDDNNDDLSSFPFSSHAQASGNLGDDEL 65

Query: 62  AFNTSVVSLPTCDGEVHDAPGRFAFLDGGVVLCLPMFYLQGVVLFPEAILPIRVVQPRSL 121
            FN ++ SL    GEV D   R +F+DGG VL +P+FYL+GVVLFPEA LP+R++QP  L
Sbjct: 66  MFNPALASLHMYLGEVEDTQNRVSFVDGGTVLKIPLFYLEGVVLFPEATLPLRIIQPSFL 125

Query: 122 TAVDKAVNHVDAPCMIGVVHVYQHTNDGHHAIASVGTTAEIHHIKQLDDGSSNVVTRGQN 181
            AV++A+N  +AP  IGV+ VY+         ASVGTTAEI   ++L DGS NV+TRGQ 
Sbjct: 126 AAVERALNQANAPSTIGVIRVYRE--GAQFKYASVGTTAEIRQYRRLGDGSFNVITRGQQ 183

Query: 182 RFRLRRRWIDADDVQWGEVQIIEEDTPQRTPRDAFGQLATNYIFN---QCGTSLLSLGTS 238
           RFRL+ RW D +    GEVQI++ED P RTPRDAFG+L            GT+ LS    
Sbjct: 184 RFRLKHRWTDVEGFTCGEVQIVDEDVPLRTPRDAFGKLVPLSKLRGRYPLGTASLSTPLR 243

Query: 239 CFRQDDHVNXXXXXXXXXXXXXXXXXXXXXARTYC--SSNEDEDLMLEQSWQKYDSVKRN 296
                   N                        +C  +S++D+ ++   + Q   S   +
Sbjct: 244 DMDAQSEANSEESFESALSPSEKRLHYSVVDSIFCNSTSSDDDQVVSTSTVQSSGSNPYS 303

Query: 297 AELENPVKHSNTRGKGEPCFQSPKSLPTKNKGAEQRRRFCAAYSSKLAL--QAPLSFWPR 354
                 +  S+     +      K+  ++ K  +Q R      ++ L+     P +FWP 
Sbjct: 304 LRSIGCLASSHDNENEDEQSAIGKTPVSQEKYQKQNRLASFRQNTDLSRFRMTPRAFWPF 363

Query: 355 WAYEMYDSYSLARRVADLWRQIVVNPSMDDYVRKPDILSYHIGSKLPMSCSVRQELLEID 414
           WAY M+DSY LA+R  DLW+QIV  P+M+ +V KPDILS+ I SK+P+S S+RQELLE+D
Sbjct: 364 WAYRMFDSYYLAQRAVDLWKQIVGVPNMEAFVNKPDILSFSIASKIPVSESIRQELLELD 423

Query: 415 GISYRLQKEIQLLKAFNIIRCRNCLALISRRSD-------GPVGAYVKQFSCGQEMMTVY 467
           G+SYRLQ+EI+LL++F+ +RC +C  +I+RR D       GP+GAYV       E+MT Y
Sbjct: 424 GVSYRLQREIELLESFDRVRCIHCQTVIARRKDMLVMSNEGPLGAYVNPHGYVHEIMTFY 483

Query: 468 NATGLALRGAPSKAHSLFPGYTWTIALCAACESNIGWLFRAEKTNLLPKSFWGLRSSQVS 527
            A  +ALRG P K  S FPGY WTIA CA CE+ +GW F A    L P SFW +R SQV+
Sbjct: 484 KANDIALRGRPVKKDSWFPGYAWTIANCATCETQLGWHFTATNKKLKPSSFWAVRGSQVA 543

Query: 528 DDTQ 531
           DD +
Sbjct: 544 DDMR 547



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,765,120
Number of extensions: 490317
Number of successful extensions: 1229
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1226
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 432
Effective length of database: 8,282,721
Effective search space: 3578135472
Effective search space used: 3578135472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)