BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0741800 Os01g0741800|Os01g0741800
         (719 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1  | chr3:14321838-14323928 FORWARD LENGTH=697          115   8e-26
AT1G18560.1  | chr1:6385614-6388005 FORWARD LENGTH=691             81   2e-15

>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
          Length = 696

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 170/382 (44%), Gaps = 14/382 (3%)

Query: 81  RFNADGSVSQW-EYKTDVARTELVKLIAREDLPLCFGESAAFEEYIQKAHNPRFCSVSRQ 139
           R+ +  + S +  +  D  R E+ K+I   D PL   +   F  ++Q    P F +VS  
Sbjct: 147 RYRSQNNASPYVAFNQDKCRQEIAKMIIMHDYPLHMVQHPGFVSFVQSIQ-PHFDAVSFN 205

Query: 140 TTSRDVFKVFDSQRAMLIETLKSISS-VALTSNIWSGNAKEDYLSVVAHFVNSNWQLGKR 198
               D    + +++  ++++L+ I     LT + W+      Y+ + AH+++S+W++ K+
Sbjct: 206 NVQGDCVATYLAEKQNVMKSLEGIPGRFCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKK 265

Query: 199 ILGLVLIDVSHTAENISEHILSVVQEYGLTDKIFSVTLDNAAANTKAMDHLKHAI----S 254
           +L +++       E +S  + + V E+GL  K+F+VT ++ A+N+ A+++++  +     
Sbjct: 266 LLNVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPASNS-AVENIRPQLCIKNP 324

Query: 255 GYVGDLYLHQRCACHIINLIVKAGLEIFKNMLADFRSAISFVNASNQRIALYKSFCIAKG 314
           G +    +   C       + K  LE  K+++ + R ++  V  S      +        
Sbjct: 325 GILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQ 384

Query: 315 VRPRK-FGLDMDVRWNATYLMLKNLLPHKGIFSVFIATNHPPVNGHALLTDLHWTIAETV 373
           V   K   LD   +WN TY+ML      K +FS  + T  P         D  W   E +
Sbjct: 385 VPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSC-LDTADPDYKKPPSAED--WRHVEAL 441

Query: 374 LLFLEQFYDSTIIMSGVYYPTSPLIMHHILEIAGHLN--TYENDRNLRNVVIPMKSKFLL 431
             FL+  +++   +     P++    H + +    L+      D  +  +   M+ K   
Sbjct: 442 CTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDK 501

Query: 432 YWSEIPFLYSFAFILDPRAKIR 453
           YW +   + + A ++DPR K++
Sbjct: 502 YWRDCSLVLAMAVVMDPRFKMK 523




 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 588 SELFAYFDSDTVNQFDDDFNILNWWHEHKHTYPILSLLDRDVLNVPVSTISLEYAFSLTG 647
           SEL  Y D   + +  + F++L+WW ++K  YP LS + RD+L++PVS  + +Y F +  
Sbjct: 591 SELDQYLDETLLPRVQE-FDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEP 649

Query: 648 RIIEDRRRCLGPAMVQALALIKDW 671
           R +++ +  L P  V+AL   ++W
Sbjct: 650 REMDEYKTSLRPETVEALICAREW 673



>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
          Length = 690

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 134/337 (39%), Gaps = 13/337 (3%)

Query: 147 KVFDSQRAMLIETLKSISS-VALTSNIWSGNAKEDYLSVVAHFVNSNWQLGKRILGLVLI 205
           +VF S R  +  TL+ I S V++T + W+      Y+SV   +++ NW   + +L +  I
Sbjct: 185 EVFTSMRGDVKTTLEHIQSKVSVTLSFWNSYENIFYMSVTGQWIDENWSSHRLLLDICRI 244

Query: 206 DVSHTAENISEHILSVVQEYGLTDKIFSVTLDNAAANTKAMDHLKHAISGYVGDLYLHQR 265
                   I   +L V++ Y + D+I   T DN+     A   LK    G     + +  
Sbjct: 245 PYPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSENAIHACHSLKEYFDGQKVLPFCYIP 304

Query: 266 CACHIINLIVKAGLEIFKNMLADFRSAISFVNASNQRIALYKSFCIAKGVRPRKFGLDMD 325
           CA   +N I+  GL   K +++  R     +NAS +    +     A      K  +D  
Sbjct: 305 CAAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQLTTAYQEGNWKLPIDAS 364

Query: 326 VRWNATYLMLKNLLPHKGIFSVFIATNHPPVNGHALLTDLHWTIAETV--LLFLEQFYDS 383
            RW+  Y M+  L          I  N   +    +L+ +       V   L L+ F+ +
Sbjct: 365 SRWSGNYQMVNILCKASKSLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLDLDSFHKT 424

Query: 384 TIIMSGVYYPTSPLIMHHILEIAGHLNTYE----NDRNLRNVVIPMKSKFLLYWSEIPFL 439
           T  M      T  L +  +  I+  + T +    N   LR     M  K   Y +++  +
Sbjct: 425 TNDMCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDWLRTCAESMAQKARSYNTQVCNV 484

Query: 440 YSF-AFILDPRAKIRGFSNVLQIMTGNYSEYLTEVRA 475
           +++   ILDPR K       +     N   Y+ E R+
Sbjct: 485 FTYITAILDPRIKTEYIPETI-----NLESYIDEARS 516



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,402,129
Number of extensions: 467786
Number of successful extensions: 1149
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 3
Length of query: 719
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 613
Effective length of database: 8,200,473
Effective search space: 5026889949
Effective search space used: 5026889949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)