BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0740400 Os01g0740400|AK110766
(302 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29310.1 | chr4:14437892-14439609 REVERSE LENGTH=425 223 9e-59
AT3G19680.1 | chr3:6840448-6842107 FORWARD LENGTH=492 160 7e-40
AT1G50040.1 | chr1:18542236-18543823 FORWARD LENGTH=461 153 1e-37
AT1G10020.1 | chr1:3269939-3271732 REVERSE LENGTH=462 145 2e-35
AT5G17640.1 | chr5:5811047-5812429 REVERSE LENGTH=433 128 3e-30
>AT4G29310.1 | chr4:14437892-14439609 REVERSE LENGTH=425
Length = 424
Score = 223 bits (568), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 112/211 (53%), Positives = 139/211 (65%), Gaps = 3/211 (1%)
Query: 92 RSWLS-TLHGDRDAQARREQRKGWTVTIHDLSGSPVAMASMVTPFVPSPAGSGRVSRANP 150
R W++ TL GD+ + + +RKGW +TIHDLSGSPVA ASM+TPFV SP GS RVSR+NP
Sbjct: 212 RGWITRTLSGDQWEKKQARERKGWMITIHDLSGSPVAAASMITPFVASP-GSDRVSRSNP 270
Query: 151 GAWLILQPTGAGPASWKPWARLEAWRERGPVDALGYRLELVFDSGPTECAVPIAESSIST 210
GAWLIL+P G +SWKPW RLEAWRERG +D LGY+ ELV D+ T +PIAE ++ST
Sbjct: 271 GAWLILRPHGTCVSSWKPWGRLEAWRERGAIDGLGYKFELVRDNS-TSTGIPIAEGTMST 329
Query: 211 KRGGQFVIDPATXXXXXXXXXXXXXXXXXMGSTAEGEGRASRPTVQVGVQHATCMGXXXX 270
K+GG+F ID MGS+ EGEG+ S+P V VG QH TCM
Sbjct: 330 KQGGKFSIDRRVSGQGESPAISSPVKGFVMGSSVEGEGKVSKPVVHVGAQHVTCMADAAL 389
Query: 271 XXXXXXXXXXCMDACKLFSQRLRKELCHDQE 301
+DAC+LFS++LRKELCHD +
Sbjct: 390 FVALSAAVDLSVDACQLFSRKLRKELCHDDQ 420
>AT3G19680.1 | chr3:6840448-6842107 FORWARD LENGTH=492
Length = 491
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 128/247 (51%), Gaps = 51/247 (20%)
Query: 92 RSWLSTLHGDRDAQARREQRKGWTVTIHDLSGSPVAMASMVTPFVPSPAGSGRVSRANPG 151
RS +S+++ +++ ++ +RKGW++T+HDLSGSPVAMASMVTPFVPSP GS RV+R++PG
Sbjct: 245 RSCISSMNSEKEQPSK--ERKGWSITVHDLSGSPVAMASMVTPFVPSP-GSNRVTRSSPG 301
Query: 152 AWLILQPTGAGPASWKPWARLEAWRERGPVDALGYRLELVFDSGPTECAVPIAESSISTK 211
AWLIL+P G +WKPW RLEAWRE G D LGYR EL D T + A SSIS K
Sbjct: 302 AWLILRPDG---CTWKPWGRLEAWREAGYSDTLGYRFELFQDGIATAVS---ASSSISLK 355
Query: 212 RGGQFVID-------------------------------PATXXXXXXXXXXXXXXXXXM 240
GG FVID PA+
Sbjct: 356 NGGSFVIDVTGGTSTTASTPTTSPQGSWDLGSGSSAGSRPASRPGSGSGSDFGYLLPQHP 415
Query: 241 GSTAEGEG-----------RASRPTVQVGVQHATCMGXXXXXXXXXXXXXXCMDACKLFS 289
+ A+ G + S+P V+VGV H TC +DAC+LFS
Sbjct: 416 SAAAQNRGFVMSATVEGVGKRSKPEVEVGVTHVTCTEDAAAHVALAAAVDLSLDACRLFS 475
Query: 290 QRLRKEL 296
+LRKEL
Sbjct: 476 HKLRKEL 482
>AT1G50040.1 | chr1:18542236-18543823 FORWARD LENGTH=461
Length = 460
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 115/221 (52%), Gaps = 40/221 (18%)
Query: 109 EQRKGWTVTIHDLSGSPVAMASMVTPFVPSPAGSGRVSRANPGAWLILQPTGAGPASWKP 168
++RKGW++TIHDLSGSPVAMASMVTPFVPSP GS RVSR++PGAWLIL+P G +WKP
Sbjct: 238 KERKGWSITIHDLSGSPVAMASMVTPFVPSP-GSNRVSRSSPGAWLILRPDG---YTWKP 293
Query: 169 WARLEAWRERGPVDALGYRLELVFDSGPTECAVPIAESSISTKRGGQFVID--------- 219
W RL+AWRE G D LGYR EL D A SSISTK GG F+ID
Sbjct: 294 WVRLQAWREPGVSDVLGYRFELYKDG---IAVAVSASSSISTKLGGSFIIDGSTSTTTTA 350
Query: 220 ------------------------PATXXXXXXXXXXXXXXXXXMGSTAEGEGRASRPTV 255
+ M + +G + S+P V
Sbjct: 351 SWSSSEGSFDLSSWSSIRSSRTDSGSGSDFRFSLSQAQQNLGFVMSTRVQGVEKQSKPKV 410
Query: 256 QVGVQHATCMGXXXXXXXXXXXXXXCMDACKLFSQRLRKEL 296
+VGV+H TC MDAC+LFSQ+LR EL
Sbjct: 411 EVGVKHVTCTEDAAAHVALAAAVDLSMDACRLFSQKLRNEL 451
>AT1G10020.1 | chr1:3269939-3271732 REVERSE LENGTH=462
Length = 461
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 98/129 (75%), Gaps = 8/129 (6%)
Query: 92 RSWLSTLHGDRDAQARREQRKGWTVTIHDLSGSPVAMASMVTPFVPSPAGSGRVSRANPG 151
RSWL++ +R+ + +RKGW++T+HDLSGSPVAMAS+VTPFV SP G+ RVSR+NPG
Sbjct: 219 RSWLNSFGSERERPGK--ERKGWSITVHDLSGSPVAMASIVTPFVASP-GTDRVSRSNPG 275
Query: 152 AWLILQPTGAGPASWKPWARLEAWRER-GPVDALGYRLELVFDSGPTECAVPIAESSIST 210
+WLIL+P G +W+PW RLEAWRER G D LGYR EL+ D G + + +AES+IS+
Sbjct: 276 SWLILRP---GDCTWRPWGRLEAWRERGGATDGLGYRFELIPD-GSSGAGIVLAESTISS 331
Query: 211 KRGGQFVID 219
RGG+F I+
Sbjct: 332 HRGGKFSIE 340
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 240 MGSTAEGEGRASRPTVQVGVQHATCMGXXXXXXXXXXXXXXCMDACKLFSQRLRKELCHD 299
M ++ EGEG+ S+P V+V VQH +CM MDAC+LF+QR+RKELCH+
Sbjct: 399 MSASVEGEGKCSKPCVEVSVQHVSCMEDAAAYVALSAAIDLSMDACRLFNQRMRKELCHE 458
>AT5G17640.1 | chr5:5811047-5812429 REVERSE LENGTH=433
Length = 432
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 18/187 (9%)
Query: 94 WLSTLHGDRDAQARREQRKGWTVTIHDLSGSPVAMASMVTPFVPSPAGSGRVSRANPGAW 153
W S+ G RRE RKGW V IHDLSGS VA A + TPFVPS G V+++NPGAW
Sbjct: 213 WSSSGDGTELESERRE-RKGWKVKIHDLSGSAVAAAFITTPFVPS-TGCDWVAKSNPGAW 270
Query: 154 LILQPTGAGPASWKPWARLEAWRERGPVDALGYRLELVFDSGPTECAVPIAESSISTKRG 213
L+++P + P SW+PW +LEAWRERG D++ R L+ +G V ++E IS ++G
Sbjct: 271 LVVRPDPSRPNSWQPWGKLEAWRERGIRDSVCCRFHLL-SNGLEVGDVLMSEILISAEKG 329
Query: 214 GQFVID---------------PATXXXXXXXXXXXXXXXXXMGSTAEGEGRASRPTVQVG 258
G+F+ID P + M S +GEG++S+P VQ+
Sbjct: 330 GEFLIDTDKQMLTVAATPIPSPQSSGDFSGLGQCVSGGGFVMSSRVQGEGKSSKPVVQLA 389
Query: 259 VQHATCM 265
++H TC+
Sbjct: 390 MRHVTCV 396
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,637,773
Number of extensions: 201846
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 8
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)