BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0738100 Os01g0738100|J065211B15
(166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10570.1 | chr1:3487639-3491102 FORWARD LENGTH=572 106 4e-24
AT1G60220.1 | chr1:22208332-22211910 FORWARD LENGTH=585 105 9e-24
AT4G33620.1 | chr4:16147692-16152853 FORWARD LENGTH=784 55 2e-08
AT1G09730.1 | chr1:3148017-3154236 REVERSE LENGTH=964 55 2e-08
AT3G48480.1 | chr3:17957326-17959062 REVERSE LENGTH=299 49 1e-06
>AT1G10570.1 | chr1:3487639-3491102 FORWARD LENGTH=572
Length = 571
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 67/99 (67%)
Query: 32 FLIAEWQHLQNDSSYTIPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERFIQ 91
FL EW +L D+ +P S ++W L IN+ +VQVP Q+N +DCG+F+L +I RFI+
Sbjct: 466 FLREEWNYLNQDAPLDLPISAKVWRDLPNMINEAEVQVPQQKNDFDCGLFLLFFIRRFIE 525
Query: 92 EAPERLTRENLCMFGRKWFDPKETSGLRDRIRALMFDAF 130
EAP+RLT ++L M +KWF P+E S LR +I ++ D F
Sbjct: 526 EAPQRLTLQDLKMIHKKWFKPEEASALRIKIWNILVDLF 564
>AT1G60220.1 | chr1:22208332-22211910 FORWARD LENGTH=585
Length = 584
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 32 FLIAEWQHL-QNDSSYTIPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERFI 90
FL EW +L Q+D S +P S ++W +L + I++ VQVP Q+N +DCG F+L +I+RFI
Sbjct: 478 FLKDEWNYLNQDDYSLDLPISEKVWKNLPRRISEAVVQVPQQKNDFDCGPFVLFFIKRFI 537
Query: 91 QEAPERLTRENLCMFGRKWFDPKETSGLRDRIRALMFDAF 130
+EAP+RL R++L MF +KWF P E S LR +IR + + F
Sbjct: 538 EEAPQRLKRKDLGMFDKKWFRPDEASALRIKIRNTLIELF 577
>AT4G33620.1 | chr4:16147692-16152853 FORWARD LENGTH=784
Length = 783
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 31 SFLIAEW----QHLQNDSSYTIPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYI 86
S+L EW ++ NDSS + N+ +++P Q N +DCG+F+LHY+
Sbjct: 455 SYLREEWKARHENTTNDSSR------------APNMQSISLELPQQENSFDCGLFLLHYL 502
Query: 87 ERFIQEAPER----LTRENLCMFGRKWFDPKETSGLRDRIRALMFD 128
+ F+ +AP + L + R WF KE S R I L+++
Sbjct: 503 DLFVAQAPAKFNPSLISRSANFLTRNWFPAKEASLKRRNILELLYN 548
>AT1G09730.1 | chr1:3148017-3154236 REVERSE LENGTH=964
Length = 963
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 31 SFLIAEWQHLQNDSSYTIPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERFI 90
++L EW+ ++S I S R N + +++P Q N +DCG+F+LHY+E F+
Sbjct: 569 TYLCEEWKERHKETSDDI--SSRFMN-----LRFVSLELPQQENSFDCGLFLLHYLELFL 621
Query: 91 QEAPERLTRENLCMFGR----KWFDPKETSGLRDRIRALMFDAFES 132
EAP + + WF P E S R I+ L+F+ E+
Sbjct: 622 AEAPLNFSPFKIYNASNFLYLNWFPPAEASLKRTLIQKLIFELLEN 667
>AT3G48480.1 | chr3:17957326-17959062 REVERSE LENGTH=299
Length = 298
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 69 VPSQRNKYDCGIFMLHYIERFIQEAPERLTRENLCMFGRK-WFDPKETSGLRDRIRAL 125
VP Q N +CG F+L+YI RFI++APE E++ F ++ WF K+ D + +L
Sbjct: 237 VPQQTNDVECGSFVLYYIHRFIEDAPENFNVEDMPYFLKEDWFSHKDLEKFCDELHSL 294
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,904,030
Number of extensions: 102001
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 5
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)