BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0737800 Os01g0737800|AK073299
(478 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40280.1 | chr5:16101391-16104783 FORWARD LENGTH=483 433 e-122
AT2G39550.1 | chr2:16501666-16504144 FORWARD LENGTH=376 112 3e-25
AT5G12210.1 | chr5:3947254-3949595 FORWARD LENGTH=322 100 1e-21
AT3G12070.1 | chr3:3845420-3847140 REVERSE LENGTH=318 100 3e-21
>AT5G40280.1 | chr5:16101391-16104783 FORWARD LENGTH=483
Length = 482
Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/439 (49%), Positives = 283/439 (64%), Gaps = 21/439 (4%)
Query: 57 ELPRLTVTQVEQMKVEAKVGEIYRVLFGNAPNANSLMLELWREQHVEYLTRGLKHLGPSF 116
EL LTV+Q EQ VE V IY + + M+E+ R++ ++YL +GL+ LGP F
Sbjct: 42 ELSSLTVSQREQFLVENDVFGIYNYFDASDVSTQKYMMEIQRDKQLDYLMKGLRQLGPQF 101
Query: 117 HVLDANRPWLCYWIIHALAXX-XXXXXXXXXXXXXFLSRCQDKDXXXXXXXXQLPHLATT 175
LDANRPWLCYWI+H++A FL RCQ + QLPHLATT
Sbjct: 102 SSLDANRPWLCYWILHSIALLGETVDDELESNAIDFLGRCQGSEGGYGGGPGQLPHLATT 161
Query: 176 YAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRMHDGGEIDVRASYTAISVASL 235
YAAVN LVT+G ++ALSS+NR+ + F+ RMKDTSG FRMHD GE+DVRA YTAISVAS+
Sbjct: 162 YAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASI 221
Query: 236 VNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASL 295
+NI+D EL +G+G+YI CQTYEGGI GEP +EAHGGYT+CGLA MIL+NEVD+L+L SL
Sbjct: 222 LNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSL 281
Query: 296 IGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSKRPPGD 355
+ W RQGVE GFQGRTNKLVDGCY+FWQ A L Q+L + D + S +
Sbjct: 282 MNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSHISEGTNE 341
Query: 356 DACGTSSSTEA------------------AYYAKFGFDFIEKSNQIGPLFHNIALQQYIL 397
+ + +I + Q+ +F ++ LQ+Y+L
Sbjct: 342 EHHAHDEDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYINRRMQL--VFDSLGLQRYVL 399
Query: 398 LCAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDSDACPLPQHVLGPYSNLLEP 457
LC+++ DGG RDKP K RD YH+CYCLSGLSV+Q++ + D D PL + ++G YSNLLEP
Sbjct: 400 LCSKIPDGGFRDKPRKPRDFYHTCYCLSGLSVAQHAWLKDEDTPPLTRDIMGGYSNLLEP 459
Query: 458 IHPLYNVVLDKYHTAYEFF 476
+ L+N+V+D+Y+ A EFF
Sbjct: 460 VQLLHNIVMDQYNEAIEFF 478
>AT2G39550.1 | chr2:16501666-16504144 FORWARD LENGTH=376
Length = 375
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 129/284 (45%), Gaps = 66/284 (23%)
Query: 171 HLATTYAAVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFR-MHDGGEIDVRASYTA 229
HLA+TY A+ L IG + LS+++ +L M+ ++ G+F +H GGE D+R Y A
Sbjct: 134 HLASTYCALAILKVIGHD--LSTIDSKSLLISMINLQQDDGSFMPIHIGGETDLRFVYCA 191
Query: 230 ISVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDK 289
++ +++ G + NYI CQ+Y+GG P +E+HGG T+C +A++ L+ +
Sbjct: 192 AAICYMLDSWSGMDKESAKNYILNCQSYDGGFGLIPGSESHGGATYCAIASLRLMGYIGV 251
Query: 290 LDLAS-----------LIGWVAFRQGVECGFQGRTNKLVDGCYSFWQGAALALTQKLMTV 338
L++ L+ W RQ + GFQGRTNK D CY+FW GA L L
Sbjct: 252 DLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGRTNKPSDTCYAFWIGAVLKLI------ 305
Query: 339 VDEQLKSSYSSKRPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILL 398
G DA L +AL+++++
Sbjct: 306 ---------------GGDA----------------------------LIDKMALRKFLMS 322
Query: 399 CAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDSDACP 442
C Q GG PG+ D YHS Y + S+ + + S CP
Sbjct: 323 C-QSKYGGFSKFPGQLPDLYHSYYGYTAFSLLEEQGL--SPLCP 363
>AT5G12210.1 | chr5:3947254-3949595 FORWARD LENGTH=322
Length = 321
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 150/366 (40%), Gaps = 56/366 (15%)
Query: 86 APNANSLMLELWREQHVEYLTRGLKHLGPSFH--VLDANRPWLCYWIIHALAXXXXXXXX 143
+ ++S M++L ++HV Y+ K SF V+D R YW + L
Sbjct: 2 SSTSSSQMVQLVADKHVRYILMAEKK-KESFESVVMDHLRMNGAYWGLTTLDLLDKLGCV 60
Query: 144 XXXXXXXFLSRCQDKDXXXXXXXXQLPHLATTYAAVNTLVTIGSERALSSVNRDNLYKFM 203
+L CQ + PH+ T +AV L ++ ++ + ++
Sbjct: 61 SEEEVISWLMTCQHESGGFAGNTGHDPHILYTLSAVQILALFDK---INILDIGKVSSYV 117
Query: 204 LRMKDTSGAFRMHDGGEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAG 263
++++ G+F GEID R SY AI S++ LD + YI C+ +GG
Sbjct: 118 AKLQNEDGSFSGDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGC 177
Query: 264 EPYAEAHGGYTFCGLATMILLNEVDKLDLASLIGWVAFRQGVECGFQGRTNKLVDGCYSF 323
P AE+H G FC + + + + +D SL W+ RQ G GR KL D CYS+
Sbjct: 178 TPGAESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSW 237
Query: 324 WQGAALALTQKLMTVVDEQLKSSYSSKRPPGDDACGTSSSTEAAYYAKFGFDFIEKSNQI 383
W ++L + ++ +I+K+
Sbjct: 238 WVLSSLIMIDRV---------------------------------------HWIDKAK-- 256
Query: 384 GPLFHNIALQQYILLCAQVLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAM-VDSDACP 442
L ++IL C + +GG+ D+P D +H+ + ++GLS+ +Y + V A
Sbjct: 257 --------LVKFILDCQDLDNGGISDRPEDAVDIFHTYFGVAGLSLLEYPGVKVIDPAYA 308
Query: 443 LPQHVL 448
LP V+
Sbjct: 309 LPVDVV 314
>AT3G12070.1 | chr3:3845420-3847140 REVERSE LENGTH=318
Length = 317
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 136/333 (40%), Gaps = 54/333 (16%)
Query: 118 VLDANRPWLCYWIIHALAXXXXXXXXXXXXXXXFLSRCQDKDXXXXXXXXQLPHLATTYA 177
V+D R YW + LA ++ CQ + PH+ T +
Sbjct: 30 VMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGFAGNTGHDPHVLYTLS 89
Query: 178 AVNTLVTIGSERALSSVNRDNLYKFMLRMKDTSGAFRMHDGGEIDVRASYTAISVASLVN 237
AV L L+ ++ + + ++ +++ G+F GE+D R SY AI S++
Sbjct: 90 AVQILALFDK---LNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILK 146
Query: 238 ILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCGLATMILLNEVDKLDLASLIG 297
LD K +YI C+ +GG P AE+H G FC + + + + ++D L
Sbjct: 147 CLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVDKDLLGW 206
Query: 298 WVAFRQGVEC-GFQGRTNKLVDGCYSFWQGAALALTQKLMTVVDEQLKSSYSSKRPPGDD 356
W+ RQ E G GR KL D CYS+W ++L + ++
Sbjct: 207 WLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMIDRV--------------------- 245
Query: 357 ACGTSSSTEAAYYAKFGFDFIEKSNQIGPLFHNIALQQYILLCAQVLDGGLRDKPGKNRD 416
+IEK+ L ++IL + +GG+ D+P D
Sbjct: 246 ------------------HWIEKAK----------LVKFILDSQDMDNGGISDRPSYTVD 277
Query: 417 HYHSCYCLSGLSVSQYSAMVDSD-ACPLPQHVL 448
+H+ + ++GLS+ +Y + D A LP HV+
Sbjct: 278 IFHTYFGVAGLSLLEYPGVKTIDPAYALPVHVI 310
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,806,084
Number of extensions: 350813
Number of successful extensions: 637
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 7
Length of query: 478
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 376
Effective length of database: 8,310,137
Effective search space: 3124611512
Effective search space used: 3124611512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)