BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0727500 Os01g0727500|AK107020
         (130 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34340.1  | chr2:14489032-14489442 REVERSE LENGTH=137           67   3e-12
AT1G29640.1  | chr1:10355959-10356381 REVERSE LENGTH=141           59   6e-10
AT4G18980.1  | chr4:10398973-10399293 FORWARD LENGTH=107           53   5e-08
AT5G45630.1  | chr5:18505915-18506259 REVERSE LENGTH=115           50   2e-07

>AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137
          Length = 136

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 13/137 (9%)

Query: 4   MGEELYESDVLWPDHQSP--HDVVXXXXXXXXXXXXXXRRGQQQITRHCSTASSRPVDIP 61
           M EE  ES+V++ D  S   H                 RR ++  T   S +SS PV IP
Sbjct: 1   MAEEFDESEVVFSDGLSSVLHKENENRLFGSDMERKKTRRIKRTTTEKASLSSSLPVSIP 60

Query: 62  RAAQR-------WSXXXXXXXXXXXTMVPPHVMVSRRRSTEEGDQAFSLRTGTGRAR--R 112
               R                     M+PPH+M+ RR   + G  AFS+ +G+GR    R
Sbjct: 61  ENIFRRYVGKEEDEYSEEEYSEGGGEMIPPHIMIGRR--IQGGQMAFSVCSGSGRTLKGR 118

Query: 113 DLSHLRNSVLRMTGFIE 129
           DLS +RNSVLR+TGF+E
Sbjct: 119 DLSRVRNSVLRLTGFLE 135



>AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141
          Length = 140

 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 21/144 (14%)

Query: 4   MGEELYESDVLWPDHQSP----HDVVXXXXXXXXXXXXXXRRGQQQITRHCST------- 52
           M EE  ES++++ D+  P     D                 R   + +R   T       
Sbjct: 1   MSEEFDESEIIFSDNYFPIRRREDGNEKENNRPVDFRENSERVWNKSSRRSKTTPLPSAV 60

Query: 53  ---ASSRPVDIPRAAQRWSXXXXXXXXXX-XTMVPPHVMVSRRRSTEEGDQAFSLRTGTG 108
              +SS PV+IP   +R+S             M+PPH++V RR   E G  AFS+ TG G
Sbjct: 61  TAFSSSLPVNIP--MRRYSTEEEYSDDDGGRKMIPPHLIVGRR--MEGGQMAFSVCTGNG 116

Query: 109 RAR--RDLSHLRNSVLRMTGFIEG 130
           R    RDLS +RNSVL++TGF+E 
Sbjct: 117 RTLKGRDLSRVRNSVLKLTGFLEA 140



>AT4G18980.1 | chr4:10398973-10399293 FORWARD LENGTH=107
          Length = 106

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 56/127 (44%), Gaps = 23/127 (18%)

Query: 4   MGEELYESDVLWPDHQSPHDVVXXXXXXXXXXXXXXRRGQQQITRHCSTASSRPVDIP-R 62
           M EE  ES+V++ D                      R+  ++         S PV IP R
Sbjct: 1   MSEEFQESEVIFSDES----FTRKDNKISHNNENYERKSTEK------DKISSPVRIPSR 50

Query: 63  AAQRWSXXXXXXXXXXXTMVPPHVMVSRRRSTEEGDQAFSLRTGTGRARRDLSHLRNSVL 122
              R++            M PPHV++ +RR+  E   AFS  T  GR   DLS  RN+VL
Sbjct: 51  TTIRYTEEEGE-------MTPPHVIIEKRRT--EAQMAFSFCTLKGR---DLSRHRNTVL 98

Query: 123 RMTGFIE 129
           RMTGF+E
Sbjct: 99  RMTGFLE 105



>AT5G45630.1 | chr5:18505915-18506259 REVERSE LENGTH=115
          Length = 114

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 55/128 (42%), Gaps = 15/128 (11%)

Query: 4   MGEELYESDVLWPDHQSPHDVVXXXXXXXXXXXXXXRRGQQQITR-HCSTASSRPVDIPR 62
           M EE  ESD+++ D                      R  +++ TR H +   + PV IP 
Sbjct: 1   MSEEFQESDIIFSDQSK------ISTSSRYTKLYNSRNDEKKGTRRHETAEKTSPVRIPT 54

Query: 63  AAQRWSXXXXXXXXXXXTMVPPHVMVSRRRSTEEGDQAFSLRTGTGRARRDLSHLRNSVL 122
              R             T  PPHV++ RR   +    AFS  T  GR   DLS  RNSVL
Sbjct: 55  NNFRCLEWDTTEEEDDKT--PPHVIIERRMKEQ---IAFSACTLKGR---DLSRHRNSVL 106

Query: 123 RMTGFIEG 130
           RMTGF+E 
Sbjct: 107 RMTGFLEA 114



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,139,319
Number of extensions: 53379
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 4
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)