BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0722100 Os01g0722100|AK066657
         (327 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29540.2  | chr4:14497775-14499765 FORWARD LENGTH=337          402   e-112

>AT4G29540.2 | chr4:14497775-14499765 FORWARD LENGTH=337
          Length = 336

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/278 (67%), Positives = 227/278 (81%), Gaps = 1/278 (0%)

Query: 49  GQGVSIGPFCTVGASARIGDACQLHAGSHVMGDTELGERCVVLTGAILGSDIPGQTIIGE 108
           G+GVS+GP+CT+G+S ++G+ C+L+  SHV G+TELGE CV++TGA++G ++PG T IG 
Sbjct: 54  GKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGC 113

Query: 109 NNVIGHHAVVGVKCQDLKYKSGDECFLQIGNNNEIREYCSIHRSSKSCDCTVIGDNNLIM 168
           NN+IGHHAVVGVKCQDLKYK GDECFL IGNNNEIRE+CSIHRSSK  D TVIGDNNLIM
Sbjct: 114 NNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIM 173

Query: 169 GSCHIAHDCRIGNNNIFANNTLFAGHVVVEDCTHTAGAVVVHQFCHIGSFSFLGGGSVIA 228
           GSCHIAHDC+IG+ NIFANNTL AGHVVVED THTAGA VVHQFCHIGSF+F+GGGSV++
Sbjct: 174 GSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVS 233

Query: 229 QDVPRYMMVAGDRAELRGLNLEGLKRNGFSDQEVRMLRKAYQQVFMPSINSQSSFDXXXX 288
           QDVP+YMMVAG+RAELRGLNLEGL+RNGF+  E++ LR AY+++FM +     SF+    
Sbjct: 234 QDVPKYMMVAGERAELRGLNLEGLRRNGFTMSEMKSLRAAYRKIFMSTETVSLSFEERLT 293

Query: 289 XXXXXXXXXXTH-VSYMVESIRMSFGQGRRGICKFRSW 325
                        VS M++SIR SF + RRGICKFR W
Sbjct: 294 ELEQDQELYSVPAVSAMLQSIRDSFTESRRGICKFRQW 331



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,162,138
Number of extensions: 246759
Number of successful extensions: 463
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,392,385
Effective search space: 1913463780
Effective search space used: 1913463780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)