BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0721800 Os01g0721800|AK120924
         (507 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14470.1  | chr3:4857940-4861104 FORWARD LENGTH=1055            72   6e-13
AT3G14460.1  | chr3:4851990-4856264 REVERSE LENGTH=1425            49   7e-06

>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
          Length = 1054

 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 168/397 (42%), Gaps = 42/397 (10%)

Query: 2   DTFFSAVLGDLLSRSISFMVDSYYQKHQGVEENLQCLHRLLLRIQAIVEEADSRHITNQA 61
           + F +A L  L    +S    S++++ +  E  L+ L   LL I A++ +A+ + ITN  
Sbjct: 6   EMFLAAFLQALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQITNPV 65

Query: 62  MLLQLRMLSNMMYRGYYFLDNFRCRIVQAHAQDEVRDHSLALSSFNPLKQFCFSTTTRKM 121
           +   +  L +++Y     LD+     ++ +   E        SS N L+Q     +    
Sbjct: 66  VEKWVNELRDVVYHAEDALDDIATEALRLNIGAES-------SSSNRLRQLRGRMSLGDF 118

Query: 122 VSEVSERKE--LHKMLGHLESIVSD-----MQEFVVFVSSYPRMSRQPYCSYLLLENCMF 174
           +   SE  E  L K+   LE + S      ++E    +       R P  S L+ E+ +F
Sbjct: 119 LDGNSEHLETRLEKVTIRLERLASQRNILGLKELTAMIPK----QRLPTTS-LVDESEVF 173

Query: 175 GRQEEQERVINFLLARHPPGGEEVIDVLPIIGPGRVGKSTLVEHVCHDERVRKYFSTIVF 234
           GR ++++ ++ FL+  +  G +  I V+ I+G G VGK+TL + + +D+ VR YF T V+
Sbjct: 174 GRDDDKDEIMRFLIPEN--GKDNGITVVAIVGIGGVGKTTLSQLLYNDQHVRSYFGTKVW 231

Query: 235 YGLG--------------SIENNGDMAFLPDTGAVKYRNPVSGKQSLAIIELVDEMDDET 280
             +               S+ +        D   VK +  ++G   L  + ++D++ +E 
Sbjct: 232 AHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGT-GLPFLLVLDDLWNEN 290

Query: 281 ---WKKILHSLRGDHIAPVSKIIIMSRSNKI-ELFGTTKALQLDFLPKEVFWYFFKTIAF 336
              W  +       H A  S+I++ +RS ++  +        L  L     W  F    F
Sbjct: 291 FADWDLLRQPF--IHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVF 348

Query: 337 GSTSPVEEPKLASICMDIAALVNRSFIGLNVHGSILR 373
           G+  P    ++  +   I        + +   G +LR
Sbjct: 349 GNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLR 385



>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
          Length = 1424

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 31/243 (12%)

Query: 173 MFGRQEEQERVINFLLARH--PPGGEEVIDVLPIIGPGRVGKSTLVEHVCHDERVRKYFS 230
           + GR E++  ++N LL+      G   VI V+ + G   VGK+TL E V +D RV ++F 
Sbjct: 168 LVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPG---VGKTTLTEIVFNDYRVTEHFE 224

Query: 231 TIVFYGLG------------------SIENNGDMAFLPDTGAVKYRNPVSGKQSLAIIEL 272
             ++   G                  S  N  D+  L     ++ +  +SGK+ L +++ 
Sbjct: 225 VKMWISAGINFNVFTVTKAVLQDITSSAVNTEDLPSL----QIQLKKTLSGKRFLLVLDD 280

Query: 273 VDEMDDETWKKILHSLRGDHIAPVSKIIIMSRSNKIELFGTTKAL-QLDFLPKEVFWYFF 331
                D  W+    +         SKI++ +RS  +      + + Q+  +  E  W   
Sbjct: 281 FWSESDSEWESFQVAFTDAEEG--SKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELI 338

Query: 332 KTIAFGSTSPVE-EPKLASICMDIAALVNRSFIGLNVHGSILRSNICAQFWYSYLKRLKY 390
              AFG+ S      +L  I   IA       +      S LRS      WY+  K    
Sbjct: 339 SRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKNFSS 398

Query: 391 YTD 393
           YT+
Sbjct: 399 YTN 401



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,253,414
Number of extensions: 476497
Number of successful extensions: 1195
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1195
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 404
Effective length of database: 8,282,721
Effective search space: 3346219284
Effective search space used: 3346219284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)