BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0719700 Os01g0719700|Os01g0719700
(500 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24430.1 | chr3:8868731-8872154 REVERSE LENGTH=533 723 0.0
AT4G19540.1 | chr4:10657517-10659094 FORWARD LENGTH=314 164 9e-41
AT5G50960.1 | chr5:20734267-20735824 FORWARD LENGTH=351 134 1e-31
>AT3G24430.1 | chr3:8868731-8872154 REVERSE LENGTH=533
Length = 532
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/453 (79%), Positives = 389/453 (85%), Gaps = 39/453 (8%)
Query: 74 EDAKKDVLVALSQIIDPDFGTDIVSCGFVKDLEISEALEEVSFRLELTTPACPIKDMFEE 133
+ ++KDVL ALSQIIDPDFGTDIVSCGFVKDL I+EAL EVSFRLELTTPACP+KDMFE
Sbjct: 77 QTSEKDVLKALSQIIDPDFGTDIVSCGFVKDLGINEALGEVSFRLELTTPACPVKDMFEN 136
Query: 134 KANEVVAALPWVKK-----------------------------------GGVGKSTVAVN 158
KANEVVAALPWVKK GGVGKSTVAVN
Sbjct: 137 KANEVVAALPWVKKVNVTMSAQPAKPIFAGQLPFGLSRISNIIAVSSCKGGVGKSTVAVN 196
Query: 159 LAYTLAGMGARVGIFDADVFGPSLPTMVSPENRLLVMNPESRSILPTEYLGVKMVSFGFA 218
LAYTLAGMGARVGIFDADV+GPSLPTMV+PE+R+L MNPE ++I+PTEY+GVK+VSFGFA
Sbjct: 197 LAYTLAGMGARVGIFDADVYGPSLPTMVNPESRILEMNPEKKTIIPTEYMGVKLVSFGFA 256
Query: 219 GQGRAIMRGPMVSGVINQLLTTTDWGELDYLVIDMPPGTGDIHLTLCQVVAPLTAAVIVT 278
GQGRAIMRGPMVSGVINQLLTTT+WGELDYLVIDMPPGTGDI LTLCQV APLTAAVIVT
Sbjct: 257 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV-APLTAAVIVT 315
Query: 279 TPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCYFDADGKRFYPFGQGSGAQARKVVQQFG 338
TPQKLAFIDVAKGVRMFSKLKVPCVAVVENMC+FDADGKR+YPFG+GSG++ VV+QFG
Sbjct: 316 TPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCHFDADGKRYYPFGKGSGSE---VVKQFG 372
Query: 339 IPHLFDLPIRPTLSASGDTGIPEVVADPQGDVAKTFQNLGVCVVQQCAKIRQQVSTAVSY 398
IPHLFDLPIRPTLSASGD+G PEVV+DP DVA+TFQ+LGVCVVQQCAKIRQQVSTAV+Y
Sbjct: 373 IPHLFDLPIRPTLSASGDSGTPEVVSDPLSDVARTFQDLGVCVVQQCAKIRQQVSTAVTY 432
Query: 399 DRSIRAIRVKVPDSDEEFLLHPATVRRNDRSAQSVDEWTGEQKVQYGXXXXXXXXXXXRP 458
D+ ++AIRVKVP+SDEEFLLHPATVRRNDRSAQSVDEWTGEQKV YG RP
Sbjct: 433 DKYLKAIRVKVPNSDEEFLLHPATVRRNDRSAQSVDEWTGEQKVLYGDVAEDIEPEDIRP 492
Query: 459 MGNYAVSITWPDGFSQIAPYDQLEMLERLVDVP 491
MGNYAVSITWPDGFSQIAPYDQLE +ERLVDVP
Sbjct: 493 MGNYAVSITWPDGFSQIAPYDQLEEIERLVDVP 525
>AT4G19540.1 | chr4:10657517-10659094 FORWARD LENGTH=314
Length = 313
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 148/250 (59%), Gaps = 11/250 (4%)
Query: 147 KGGVGKSTVAVNLAYTLAGMGA-RVGIFDADVFGPSLPTMVSPENRLLVMNPESRSILPT 205
KGGVGKS+ AVNLA LA ++G+ DADV+GPS+P M++ + V + ++P
Sbjct: 52 KGGVGKSSTAVNLAVALANKCELKIGLLDADVYGPSVPIMMNINQKPQV--NQDMKMIPV 109
Query: 206 EYLGVKMVSFGFAGQGRA--IMRGPMVSGVINQLLTTTDWGELDYLVIDMPPGTGDIHLT 263
E GVK +S G + A + RGPMV + ++ DWG+LD LV+DMPPGTGD ++
Sbjct: 110 ENYGVKCMSMGLLVEKDAPLVWRGPMVMSALAKMTKGVDWGDLDILVVDMPPGTGDAQIS 169
Query: 264 LCQVVAPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCYFDAD--GKRFYP 321
+ Q + L+ AVIV+TPQ +A D +G+ MF K++VP + +VENM F + +
Sbjct: 170 ISQNLK-LSGAVIVSTPQDVALADANRGISMFDKVRVPILGLVENMSCFVCPHCNEPSFI 228
Query: 322 FGQGSGAQARKVVQQFGIPHLFDLPIRPTLSASGDTGIPEVVADPQGDVAKTFQNLGVCV 381
FG+ AR+ + G+ + ++P+ ++ D G+P VV+ P V+K +Q+L V
Sbjct: 229 FGK---EGARRTAAKKGLKLIGEIPLEMSIREGSDEGVPVVVSSPGSIVSKAYQDLAQNV 285
Query: 382 VQQCAKIRQQ 391
V+ ++R+
Sbjct: 286 VKGLKELREN 295
>AT5G50960.1 | chr5:20734267-20735824 FORWARD LENGTH=351
Length = 350
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 125/252 (49%), Gaps = 40/252 (15%)
Query: 147 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVFGPSLPTMVSPENRLLVMNPESRS-ILPT 205
KGGVGKST + L++ LAGM +VG+ D D+ GPS+P M+ E + + + S +
Sbjct: 68 KGGVGKSTFSAQLSFALAGMDHQVGLMDIDICGPSIPKMLGLEGQEIHQSNLGWSPVYVE 127
Query: 206 EYLGVKMVSFGFAGQGRAIM-RGPMVSGVINQLLTTTDWGELDYLVIDMPPGTGDIHLTL 264
+ LGV + F A++ RGP +G+I Q L WGE+DYLV+D PPGT D H+++
Sbjct: 128 DNLGVMSIGFMLPNSDEAVIWRGPRKNGLIKQFLKDVYWGEIDYLVVDAPPGTSDEHISI 187
Query: 265 CQVVAP--LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCYFDADGK--RFY 320
Q + P + A+IVTTPQ+++ IDV K V K+ VP + VVENM K +F
Sbjct: 188 VQYLLPTGIDGAIIVTTPQEVSLIDVRKEVSFCKKVGVPVLGVVENMSGLSQPLKDVKFM 247
Query: 321 PFG----------------------------------QGSGAQARKVVQQFGIPHLFDLP 346
SG A ++ ++ G+P L +P
Sbjct: 248 KLATETGSSINVTEDVIACLRKNAPELLDIVACSEVFDSSGGGAERMCREMGVPFLGKVP 307
Query: 347 IRPTLSASGDTG 358
+ P L + + G
Sbjct: 308 MDPQLCKAAEQG 319
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,021,085
Number of extensions: 362359
Number of successful extensions: 779
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 3
Length of query: 500
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 397
Effective length of database: 8,282,721
Effective search space: 3288240237
Effective search space used: 3288240237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)