BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0718000 Os01g0718000|AK111476
(148 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176 112 7e-26
AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169 109 4e-25
AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164 108 1e-24
AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177 105 7e-24
AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162 100 3e-22
AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131 100 5e-22
AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171 98 2e-21
AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174 96 8e-21
AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161 93 6e-20
AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126 89 9e-19
>AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176
Length = 175
Score = 112 bits (280), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 85/161 (52%), Gaps = 26/161 (16%)
Query: 13 PLPCANGCGFFGSADTRGLCSKCYR-------QTVMXXXXXXXXXXXXX--------EHD 57
P C NGCGFFGS LCSKCYR QT + +H
Sbjct: 16 PKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPGQKHP 75
Query: 58 QVVLPA----------PEGVPVDEGAMPPPPPRHGAKTKSRCAACGRSVGLMGFECRCGA 107
+ PA P VPV P R + +RC +C + VG+MGF+C+CG+
Sbjct: 76 LEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSR-PVRPNNRCFSCNKKVGVMGFKCKCGS 134
Query: 108 VFCGAHRYSDRHDCGYDYRGAGRDAIARANPVVRPDKVEKL 148
FCG+HRY ++H+C +D++ GRDAIA+ANP+V+ DKV+++
Sbjct: 135 TFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169
Length = 168
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 84/170 (49%), Gaps = 28/170 (16%)
Query: 4 GSERQDERP-----PLPCANGCGFFGSADTRGLCSKCYR----------------QTVMX 42
GSE+ D P C GCGFFGS LCSKCYR + +
Sbjct: 2 GSEQNDSTSFSPSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLN 61
Query: 43 XXXXXXXXXXXXEHDQVVLPAPEGVPVDE----GAMPPPPPRHGAKTKSRCAACGRSVGL 98
E Q VL + A P PP+ T +RC +C + VG+
Sbjct: 62 PNKPKTQPQQSQEITQGVLGSGSSSSSTRGGDSAAAPLDPPKS---TATRCLSCNKKVGV 118
Query: 99 MGFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAIARANPVVRPDKVEKL 148
GF+CRCG+ FCG HRY + H+C +D++G R+AIA+ANPVV+ DKV+++
Sbjct: 119 TGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
>AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164
Length = 163
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 32/169 (18%)
Query: 5 SERQDERPPLPCANGCGFFGSADTRGLCSKCYRQTVMXXXXXXXXXXXXXEH-------- 56
+E + P CAN CGFFGS T+ LCSKC+R +
Sbjct: 2 AEEHRLQEPRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSLAAVGAAA 61
Query: 57 --------------DQVVLPAPE---GVPVDEGAMPPPPPRHGAKTKSRCAACGRSVGLM 99
++V E +E PP P+ RC C R VG+
Sbjct: 62 SSSVSPPPPPPADSKEIVEAKSEKRAAAEPEEADGPPQDPK-------RCLTCRRRVGIT 114
Query: 100 GFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAIARANPVVRPDKVEKL 148
GF CRCG VFCG HRY+++H+C +D++ G+D IA+ANP+V+ DK+EK+
Sbjct: 115 GFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLEKI 163
>AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177
Length = 176
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 5 SERQDERPPLPCANGCGFFGSADTRGLCSKCYRQTVMXXXXXXXXXXXXXEHDQ------ 58
++ Q P L C GCGFFGS LCSKCYR + +
Sbjct: 12 TQSQASEPKL-CVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRS 70
Query: 59 ---------VVLPAPEGVPV-------DEGAMPPP-PPRHGAKTKSRCAACGRSVGLMGF 101
VV P PE V A+P P A+T +RC C + VG+MGF
Sbjct: 71 LFIAEPPAVVVEPKPEKAAVVVVSAEPSSSAVPEANEPSRPART-NRCLCCNKKVGIMGF 129
Query: 102 ECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAIARANPVVRPDKVEKL 148
+C+CG+ FCG HRY + HDC +D++ GR IA+ANPVV+ DK+++
Sbjct: 130 KCKCGSTFCGEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKIQRF 176
>AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162
Length = 161
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 74/150 (49%), Gaps = 21/150 (14%)
Query: 16 CANGCGFFGSADTRGLCSKCY-------------RQTVMXXXXXXXXXXXXXEHDQVVLP 62
C N CGFFGS+ T LCS CY + TV ++ +P
Sbjct: 16 CVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIAPVLENYAAELEIP 75
Query: 63 AP----EGVPVDEGAMPPPPPRHGAKTKSRCAACGRSVGLMGFECRCGAVFCGAHRYSDR 118
E P+ P PP+ +RC C + VGL GF CRCG FCG+HRY +
Sbjct: 76 TTKKTEEKKPIQIPTEQPSPPQR----PNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEV 131
Query: 119 HDCGYDYRGAGRDAIARANPVVRPDKVEKL 148
H C +D++ AGR+ IA+ANP+V K++K+
Sbjct: 132 HGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131
Length = 130
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 22/145 (15%)
Query: 9 DERPPLPCANGCGFFGSADTRGLCSKCYRQTVMXXXXXXXXXXXXXEHDQVVLPAPEGVP 68
+E LPC GCG +G+ LCS CY+++V+ +H PA P
Sbjct: 3 NETEALPCEGGCGLYGTRVNNNLCSLCYKKSVL-------------QHS----PALRFEP 45
Query: 69 VDEGAMPPPPPRHGAK-----TKSRCAACGRSVGLMGFECRCGAVFCGAHRYSDRHDCGY 123
E + PP A K RC C R VG++GF+CRCG +FCG+HRY + H C +
Sbjct: 46 ETEQSQCCPPTNSPAVEEEPVKKRRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPF 105
Query: 124 DYRGAGRDAIARANPVVRPDKVEKL 148
DY+ +GR A+A P++R DK+++
Sbjct: 106 DYKQSGRLALATQLPLIRADKLQRF 130
>AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171
Length = 170
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 16 CANGCGFFGSADTRGLCSKCYRQTVMXXXXXXXXXXXXXEHDQV---------------- 59
C N CGF GS+ T LCS CY + E
Sbjct: 16 CVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEISSPII 75
Query: 60 --VLPAPE---GVPVDEGAMPPPPPRHGAKTK-SRCAACGRSVGLMGFECRCGAVFCGAH 113
+L P VP + + P + + +RC C + VGL GF+CRCG +FCG H
Sbjct: 76 PPLLKNPSVKLEVPEKKAVISLPTTEQNQQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVH 135
Query: 114 RYSDRHDCGYDYRGAGRDAIARANPVVRPDKVEKL 148
RY + H C YD++ AGR+ IA+ANP+V+ K++K+
Sbjct: 136 RYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQKI 170
>AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174
Length = 173
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 80/159 (50%), Gaps = 23/159 (14%)
Query: 13 PLPCANGCGFFGSADTRGLCSKCYRQTVMXXXXXXXXX----------XXXXEHDQVVLP 62
P C N CGFFGSA T +CSKC++ + E L
Sbjct: 15 PKLCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSGTSSSSNIIKETFTAALV 74
Query: 63 APEGVPVDEGAMPPPP-----------PRHGAKTK--SRCAACGRSVGLMGFECRCGAVF 109
E V+ + P P AK K SRC C + VGL GF+CRCG++F
Sbjct: 75 DIETKSVEPMTVSVQPSSVQVVAEVVAPEEAAKPKGPSRCTTCNKRVGLTGFKCRCGSLF 134
Query: 110 CGAHRYSDRHDCGYDYRGAGRDAIARANPVVRPDKVEKL 148
CG HRY+D HDC ++Y A ++AIA+ANPVV+ +K++K+
Sbjct: 135 CGTHRYADVHDCSFNYHAAAQEAIAKANPVVKAEKLDKI 173
>AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161
Length = 160
Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 87 SRCAACGRSVGLMGFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAIARANPVVRPDKVE 146
+RC+ C + VGL GF CRCG +FC HRYSDRHDC YDY+ AGR+AIAR NPVV+ K+
Sbjct: 99 NRCSGCRKKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKMV 158
Query: 147 KL 148
K+
Sbjct: 159 KV 160
>AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126
Length = 125
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 13 PLPCANGCGFFGSADTRGLCSKCYRQTVMXXXXXXXXXXXXXEHDQVVLPAPEGVPVDEG 72
P C GCGFF ++ T+ LCSKCY + V A E V E
Sbjct: 5 PSLCIRGCGFFSTSQTKNLCSKCYNDFLKDESARYLATF------NVNTKAAEEVTAQEA 58
Query: 73 AMPPPPPRHGAKTKSRCAACGRSVGLMGFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDA 132
+ +K CA C + VGL+GF CRCG +F +HRY + H C DY+ A D
Sbjct: 59 TVLG--------SKGGCA-CKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDV 109
Query: 133 IARANPVVRPDKVEKL 148
+A+ NPVV+ DK+ +L
Sbjct: 110 LAKQNPVVKGDKLFRL 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,668,767
Number of extensions: 142075
Number of successful extensions: 800
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 10
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)